Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26c19
         (715 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   3.3  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   7.5  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   9.9  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    21   9.9  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 498 CRYYAHL*N-PLEGRLRCKCKPLF*DQASHLKIFLCRCN 385
           C  + H  N P  G  RC+C+P F  +  H  I  C+ N
Sbjct: 38  CGEHGHCVNLPGVGH-RCQCQPGFTGKYCHENINDCKVN 75


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 523 LIAYLKLSMSL--LCPFIKSSRRSSSLQM*TSVLRSGKSSKD 404
           L A +K+ M+   L   IKS R+SSSL+  T +     S+K+
Sbjct: 152 LDALVKVEMTRVSLLQLIKSLRQSSSLEHCTLIGEDNISAKN 193


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 252 LFSIYWSLLLSGALPFMMDPSTTVYELGYFL 344
           LF +    + SG   F++ PS  VY++GY+L
Sbjct: 84  LFGVVQIYIFSG---FIV-PSGVVYKIGYWL 110


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 625 YHYFPYISKSFYLLTSF 575
           + Y+P  + SFY+L  F
Sbjct: 111 HFYYPVATMSFYVLNFF 127


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,822
Number of Sequences: 336
Number of extensions: 3555
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)