Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26c19
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    31   0.12 
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    30   0.29 
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    26   4.7  

>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 321 VYELGYFLQLLEPSIVFCDREYYNDIKKSLDDLPDLKTEVYIC-NEDDLLEDFIN--GHS 491
           V+ LG+F +   PSI+FC ++ +        + P  K  + +  N +D  E F N   + 
Sbjct: 4   VFALGHFCEAEGPSIIFCTQKLHRSTVSKFFEHPTSKRSIGVTENGNDSPEAFKNELDNR 63

Query: 492 NDIDSFR*AIKNKGLKKGES 551
           N+ DS       + L K +S
Sbjct: 64  NNADSQSLQSSTESLFKADS 83


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 224 NVVPCGPSGHYRTCNRYSAFQNLLICETFSSRSVYHVC 111
           ++  CG   HY   N+  + +  L+CE+  +R V+H+C
Sbjct: 703 SIAACGAVHHYLVQNKLRS-RVALVCESGDAREVHHMC 739


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -2

Query: 174 QRVSEFAHL*NFLQSIRLSCLWRLVVSLDSEKQFLLISIYPALLHLERHLW 22
           ++  +F  L N L   RLS  WR++VS  + +  + I   P L   ++ +W
Sbjct: 461 EKAKDFLELENSLSINRLSISWRIMVS--NFEPAIFIQHTPTLHGTDKSVW 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,243
Number of Sequences: 5004
Number of extensions: 58383
Number of successful extensions: 163
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)