Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26c19
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)            33   0.17 
SB_27856| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_55833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_25806| Best HMM Match : DUF159 (HMM E-Value=0.37)                   28   6.5  
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)           28   6.5  

>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
          Length = 757

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 20/103 (19%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
 Frame = +3

Query: 87  CLKKRPNATNMINGSTGESFTNEQILKRAVSIARSIMARGAAGNNIMVVMRNHQNLFSIY 266
           C K+  +   +++G TGE++T   ++        +++  G    ++ ++   +   + +Y
Sbjct: 454 CCKRNGDKEALVDGPTGETYTYTDLITLIKKCGSALLQAGVKPKDVALLHLPNIMQYPVY 513

Query: 267 -WSLLLSGALPFMMDPSTTVYELGYFLQLLEPSIVFCDREYYN 392
            +     GA+    +P  TV EL Y L       +  D + Y+
Sbjct: 514 LYGAQAIGAVVTTANPGYTVDELAYQLIDSSAKYIITDSKLYH 556


>SB_27856| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 387 YNDIKKSLDDLPDLKTEVYICNEDDLLEDFINGHSNDIDSF 509
           Y+D  +  D+  D   E Y    DD  EDF NGH +D + +
Sbjct: 64  YDDDDEDYDNGHDDDDEDYDNGHDDDYEDFDNGHDDDDEDY 104



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 387 YNDIKKSLDDLPDLKTEVYICNEDDLLEDFINGHSNDID 503
           Y+D  +  D+  D   E Y    DD  EDF NGH +D D
Sbjct: 17  YDDDDEDYDNGYDDDDEDYDNGHDDEDEDFDNGHDDDDD 55



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 375 DREYYNDIKKSLDDLPDLKTEVYICNEDDLLEDFINGHSNDID 503
           D  + +D  +  D+  D + E Y    DD  EDF NGH +D D
Sbjct: 183 DNGHDDDDDEDYDNGHDDEDEDYDNGHDDDDEDFDNGHDDDDD 225


>SB_55833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 228 VVMRNHQNLFSIYWSLLLSGALPFMMDPSTTVYELGY 338
           V M + +NLF   +S++L  ALP  M  ++ V + GY
Sbjct: 290 VDMNSSRNLFVFGFSMMLGMALPSWMQSNSGVIQTGY 326


>SB_25806| Best HMM Match : DUF159 (HMM E-Value=0.37)
          Length = 563

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 39  DAKERDRLILAEIAFHCLKKRPNATNMINGSTGESFT-NEQILKRAVSIARSI 194
           D   RD+  L + A  C +K  NAT +I+G  GE     EQ  K    I R +
Sbjct: 79  DQAMRDKQTLVDDAEACRRKMANATALIDGLGGEKIRWTEQSKKFDQQIQRLV 131


>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
          Length = 572

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/74 (22%), Positives = 27/74 (36%)
 Frame = +3

Query: 102 PNATNMINGSTGESFTNEQILKRAVSIARSIMARGAAGNNIMVVMRNHQNLFSIYWSLLL 281
           PN T M+  S   S  N   +    SI  +IMA  A+   + +       +     +   
Sbjct: 154 PNTTRMVTSSISSSTVNVSAISTTSSIESTIMASVASSIQLNITSNTTMAVNDTLRTTST 213

Query: 282 SGALPFMMDPSTTV 323
           S   P  + PS  +
Sbjct: 214 SAVFPTTITPSPNI 227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,946,196
Number of Sequences: 59808
Number of extensions: 399467
Number of successful extensions: 982
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)