Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26c17
(300 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 151 2e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 151 2e-38
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 143 4e-36
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 143 4e-36
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 143 4e-36
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 92 2e-20
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 41 4e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 40 1e-04
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 40 1e-04
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi... 30 0.063
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 24 4.2
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 24 4.2
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 4.2
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 24 5.5
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 23 7.3
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 23 7.3
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 151 bits (367), Expect = 2e-38
Identities = 74/86 (86%), Positives = 77/86 (89%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKXLEDGRTLSDYN 222
MQIFVKTLTGKTITLEVE SDTI NVK+KIQDKEGIPP+QQRLIFAGK LEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 223 IXKESTLHLVLRLRGGAXKRXKXNYS 300
I KESTLHLVLRLRGG KR K Y+
Sbjct: 61 IQKESTLHLVLRLRGGGKKRKKKTYT 86
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 151 bits (367), Expect = 2e-38
Identities = 74/86 (86%), Positives = 77/86 (89%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKXLEDGRTLSDYN 222
MQIFVKTLTGKTITLEVE SDTI NVK+KIQDKEGIPP+QQRLIFAGK LEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 223 IXKESTLHLVLRLRGGAXKRXKXNYS 300
I KESTLHLVLRLRGG KR K Y+
Sbjct: 61 IQKESTLHLVLRLRGGGKKRKKKTYT 86
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 143 bits (347), Expect = 4e-36
Identities = 70/76 (92%), Positives = 72/76 (94%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKXLEDGRTLSDYN 222
MQIFVKTLTGKTITLEVE SDTI NVK+KIQDKEGIPP+QQRLIFAGK LEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 223 IXKESTLHLVLRLRGG 270
I KESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 143 bits (347), Expect = 4e-36
Identities = 70/76 (92%), Positives = 72/76 (94%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKXLEDGRTLSDYN 222
MQIFVKTLTGKTITLEVE SDTI NVK+KIQDKEGIPP+QQRLIFAGK LEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 223 IXKESTLHLVLRLRGG 270
I KESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 143 bits (347), Expect = 4e-36
Identities = 70/76 (92%), Positives = 72/76 (94%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKXLEDGRTLSDYN 222
MQIFVKTLTGKTITLEVE SDTI NVK+KIQDKEGIPP+QQRLIFAGK LEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 223 IXKESTLHLVLRLRGG 270
I KESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 143 bits (347), Expect = 4e-36
Identities = 70/76 (92%), Positives = 72/76 (94%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKXLEDGRTLSDYN 222
MQIFVKTLTGKTITLEVE SDTI NVK+KIQDKEGIPP+QQRLIFAGK LEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 223 IXKESTLHLVLRLRGG 270
I KESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 143 bits (347), Expect = 4e-36
Identities = 70/76 (92%), Positives = 72/76 (94%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKXLEDGRTLSDYN 222
MQIFVKTLTGKTITLEVE SDTI NVK+KIQDKEGIPP+QQRLIFAGK LEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 223 IXKESTLHLVLRLRGG 270
I KESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 143 bits (347), Expect = 4e-36
Identities = 70/76 (92%), Positives = 72/76 (94%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKXLEDGRTLSDYN 222
MQIFVKTLTGKTITLEVE SDTI NVK+KIQDKEGIPP+QQRLIFAGK LEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 223 IXKESTLHLVLRLRGG 270
I KESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 143 bits (347), Expect = 4e-36
Identities = 70/76 (92%), Positives = 72/76 (94%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKXLEDGRTLSDYN 222
MQIFVKTLTGKTITLEVE SDTI NVK+KIQDKEGIPP+QQRLIFAGK LEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 223 IXKESTLHLVLRLRGG 270
I KESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 91.9 bits (218), Expect = 2e-20
Identities = 40/77 (51%), Positives = 57/77 (74%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKXLEDGRTLSDYN 222
M I VKTLTGK I L+++P+D + +K ++++KEGIPP+QQRLI+AGK + D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 223 IXKESTLHLVLRLRGGA 273
+ S LHLVL LRGG+
Sbjct: 61 LEGGSVLHLVLALRGGS 77
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 40.7 bits (91), Expect = 4e-05
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEPSDT-IXNVKAKIQDKEGIPPNQQRLIFAGKXLEDGRTLSDY 219
M + K L + + +DT I +K KIQ ++ +Q+LI++G+ L D +T+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 220 NIXKE 234
NI ++
Sbjct: 61 NIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 39.5 bits (88), Expect = 1e-04
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKXLEDGRTLSDYN 222
+ + +K + + V+ ++ +K I I +QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 223 IXKESTLHLVLRL 261
I ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 39.5 bits (88), Expect = 1e-04
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 70 GKTITLEVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKXLEDGRTLSDYNIXKESTL 243
GK LE+EP++T +K ++ +PP +Q++I G L+D L I +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
Hub1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 73
Score = 30.3 bits (65), Expect = 0.063
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKXLEDGRTLSDYN 222
+++ GK + ++ P DT+ + K + + G P + L +D TL+DY
Sbjct: 2 IEVLCNDRLGKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYE 61
Query: 223 IXKESTLHL 249
I +L +
Sbjct: 62 IHDGMSLEM 70
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 24.2 bits (50), Expect = 4.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 154 PNQQRLIFAGKXLEDGRTLSDYNI 225
PNQ AGK L+ R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.2 bits (50), Expect = 4.2
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +1
Query: 64 LTGKTITLEVEPSDTIXNVKAKIQDKEGIPPNQ---QRLIFAGKXLEDGRTLSDYNIXKE 234
L G T EV T+ + + +G P N + I A +G TL+ YN
Sbjct: 94 LKGPERTSEVSLPQTVNLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLNHYNNGSH 153
Query: 235 STLH 246
LH
Sbjct: 154 QVLH 157
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.2 bits (50), Expect = 4.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 196 DGRTLSDYNIXKESTLHLVLRLRGGAXK 279
DG TL++ N HL++RL+ + K
Sbjct: 432 DGETLNEINTNNPEREHLIVRLKVDSQK 459
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 23.8 bits (49), Expect = 5.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -3
Query: 232 PXGYCSPRGYVHLPXAFQQRSTSVDWEGF 146
P + PRG V+ P ++R + + GF
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/27 (29%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3
Query: 211 RGYVHLPXA-FQQRSTSVDWEGFPLCL 134
RG + P + ++++ ++DW+ PLC+
Sbjct: 67 RGKIGSPSSSIRKQNDTIDWKNSPLCV 93
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 23.4 bits (48), Expect = 7.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 150 PSQSTEVDLCWKAXGRWTYPLGLQYPXGIHPPPGVEAS 263
PSQ+ V K+ +Y L G +PPP V +S
Sbjct: 47 PSQTITVKKSKKSTNSSSYFAQLHAASGQNPPPSVHSS 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.135 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,225,992
Number of Sequences: 5004
Number of extensions: 21451
Number of successful extensions: 57
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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