Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26c17
         (300 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    21   4.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   4.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   5.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      20   5.7  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   7.6  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 247 GGGWIPXGYCSPRGYVHL 194
           GG   P GY   +G+VHL
Sbjct: 77  GGLEEPKGYTLFKGFVHL 94


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 219 QYPXGIHPPPGVEASWW 269
           +YP    PPP  + S W
Sbjct: 658 EYPPDSDPPPPDDISGW 674


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 196 LPXAFQQRSTSVDWEGFPLCLEF*LSHXRWYLTARPQ 86
           +P A Q  STS+    F +  +  LS+   Y   +PQ
Sbjct: 404 IPSALQSYSTSMRDPAFYMLYQKILSYFLRYKKLQPQ 440


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 196 LPXAFQQRSTSVDWEGFPLCLEF*LSHXRWYLTARPQ 86
           +P A Q  STS+    F +  +  LS+   Y   +PQ
Sbjct: 404 IPSALQSYSTSMRDPAFYMLYQNILSYFLRYKKLQPQ 440


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 223 YCSPRGYVHLPXAFQQRSTSVDWEG 149
           YC P G++     F ++  +VD  G
Sbjct: 159 YCVPAGWIWGDQGFLKKLGAVDIAG 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.135    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,975
Number of Sequences: 438
Number of extensions: 1630
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)