Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26c16
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch... 43 5e-05
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 28 1.2
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 28 1.6
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 2.7
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 3.6
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 27 3.6
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 26 6.3
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 6.3
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.3
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 25 8.3
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 25 8.3
>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 295
Score = 42.7 bits (96), Expect = 5e-05
Identities = 22/110 (20%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Frame = +1
Query: 259 QKKAGERHETMSNKDALMFPLVASCALFGLYIFFQFFSKEYINLLLTGYFFFLGVLALSH 438
Q++ E + ++ + A++FP+ L +Y+ ++ SKEYI L+L GY ++
Sbjct: 23 QEEEPEEKQLINKRLAVLFPIFGGVTLVLMYLALRYLSKEYIQLILQGYASLASIICFVR 82
Query: 439 LLSPIISF-LVPASIPNIPFHIHFTRGERDNKQDIINYKFTSYDVICLLI 585
+P +F + A++ +I + + + + +I+ + + + + I
Sbjct: 83 SFNPKTTFGKITATMSSIAIALFYFKTKHWMASNILAWALAANSISIMRI 132
Score = 41.9 bits (94), Expect = 9e-05
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +1
Query: 544 NYKFTSYDVICLLISLCLGAWYLLKKHWIANNLFGIAFAINGVELLHLNNVVTGCILL 717
N K T + + S+ + +Y KHW+A+N+ A A N + ++ +++ TG +LL
Sbjct: 85 NPKTTFGKITATMSSIAIALFYFKTKHWMASNILAWALAANSISIMRIDSYNTGALLL 142
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 5 LSKTIRRGKLS*KLYFCIIFYKKWQIWPQKY 97
L K + R K S +L FCI+F+K W+ +Y
Sbjct: 62 LEKELARFK-SARLNFCIVFFKNWEALYSQY 91
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 27.9 bits (59), Expect = 1.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 604 WYLLKKHWIANNLFGIAFAINGVELL 681
W++ KH ++FGI F + +EL+
Sbjct: 138 WHITSKHMFVGSIFGIIFMMMALELV 163
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 622 HWIANNLFGIAFAINGVELL 681
HW AN L G+++A+NG LL
Sbjct: 259 HWHANPLNGLSWALNGEYLL 278
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 3.6
Identities = 7/23 (30%), Positives = 18/23 (78%)
Frame = +1
Query: 490 PFHIHFTRGERDNKQDIINYKFT 558
PF+IH++R +R+ ++I+ +++
Sbjct: 928 PFNIHYSRNQREEAENILRRRYS 950
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 160 SIEGIAIAYLSLVIMAILPIFFGSFRS 240
+I+GI I Y ++ + I IFFG F S
Sbjct: 403 TIDGIYIIYFDMLALIIPTIFFGFFGS 429
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 149 FSVTF-CIVSLTLSSMFIGISEAISAISYRK*CRNTIFKTTFPYG 18
F V F C + T+ S F AI Y K CR +F +P+G
Sbjct: 210 FLVIFICYIFFTVLSFF----NVPDAIVYSKLCRGLMFYLLYPFG 250
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 85 ASEIPINIEDSVKETIQNVTEKPPSSIEGIAIAYLSLV 198
A + I ++ + E ++ E+PPS + I + LSL+
Sbjct: 79 AFRLQIASKEFLNELVRRFPERPPSRLNKIQVMILSLI 116
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 379 TPLRRIGRKY-IVRKEHMMQPTGTSEHLCWTLFHDA 275
T + G Y ++ K ++ P + LCWT+ +DA
Sbjct: 591 TQCKSCGPSYRLLPKIELLLPCSGRDDLCWTILNDA 626
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +1
Query: 73 MADMASEIPINIEDSVKETIQNVTEKPPSSIEGIAIAYLS 192
+ ++ IP I+DS K T+ TE+ S++ ++ +
Sbjct: 126 LEQQSNNIPTGIQDSSKYTVNGPTERDNKSMKSFVRSFFT 165
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +1
Query: 484 NIPFHIHFTRGERDNKQDIINYKFTSYDVICLLISLCLGAWYLLKKHWIANNLFGIAFAI 663
N H++ +G D+++++ FTS ++++ + Y L + N L I F I
Sbjct: 563 NFELHLYKAKGPLDDRENLAKLSFTS-----TIVTMSVCDEYSLVVYTADNFLHHIRFDI 617
Query: 664 NGVELLHLN 690
N + L L+
Sbjct: 618 NELGRLELD 626
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 627 PVLFKQVPSSKTERDEQTNHIIGCELVIDDILFVVSLTTG 508
P L + VP + +E+ ++ + DDI VVS TG
Sbjct: 440 PELERSVPKEEKTLEEKKPSMVHDSVTSDDIAVVVSRATG 479
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,633
Number of Sequences: 5004
Number of extensions: 64838
Number of successful extensions: 215
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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