Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26c16
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0124 + 901034-901153,901455-901481,901713-901792,903739-90... 112 2e-25
05_04_0436 + 21226656-21226695,21226819-21226934,21227059-212272... 111 5e-25
02_05_1289 - 35470076-35470243,35471032-35471108,35471935-354719... 60 1e-09
10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601 53 2e-07
02_05_1270 + 35360375-35360494,35361361-35361519,35361611-353617... 38 0.008
11_06_0109 + 20202629-20205452,20206354-20206578,20207208-202080... 31 1.2
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 30 2.1
06_03_1505 + 30635572-30635802,30636977-30637135,30637217-306373... 29 2.8
08_02_0213 + 14349821-14350396,14351360-14351610,14351695-143520... 29 4.9
05_07_0278 + 28911722-28911934,28912154-28913055,28913142-289135... 28 6.5
12_02_0797 - 23230441-23230757,23230922-23231069,23231352-232325... 28 8.6
06_03_0577 + 22461831-22462023,22462378-22463160,22463380-224649... 28 8.6
>02_01_0124 +
901034-901153,901455-901481,901713-901792,903739-903811,
904015-904072,904561-904615,905140-905164,905361-905421,
907416-907531,907661-907812,907918-908003,908182-908309,
908451-908501,908774-908860,908964-909033,909351-909407,
909729-909865,910313-910390,910971-911057
Length = 515
Score = 112 bits (270), Expect = 2e-25
Identities = 65/181 (35%), Positives = 96/181 (53%), Gaps = 2/181 (1%)
Frame = +1
Query: 187 LSLVIMAILPIFFGSFRSVKYLNEQKKAGERHETMSNKDALMFPLVASCALFGLYIFFQF 366
+++++ A L ++ G +RSVK ETMS + A+ FPLV S L L++ F+F
Sbjct: 181 VNVILTACLAVYVGCYRSVKPTPPS-------ETMSKEHAMRFPLVGSAMLLSLFLLFKF 233
Query: 367 FSKEYINLLLTGYFFFLGVLALSHLLSPIISFLVPASIPN--IPFHIHFTRGERDNKQDI 540
SK+ +N +LT YFF LG+ AL L P I +P + I + F
Sbjct: 234 LSKDLVNAVLTAYFFILGIAALCATLLPSIKRFLPKEWNDNAIVWCAPFFHS-------- 285
Query: 541 INYKFTSYDVICLLISLCLGAWYLLKKHWIANNLFGIAFAINGVELLHLNNVVTGCILLC 720
++ +FT V+ + WY KKHW+ANN+ GI+F I G+E+L L + TG ILL
Sbjct: 286 LSVEFTKSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLSLGSFKTGAILLA 345
Query: 721 G 723
G
Sbjct: 346 G 346
>05_04_0436 +
21226656-21226695,21226819-21226934,21227059-21227210,
21227309-21227394,21227999-21228126,21228267-21228317,
21228574-21228660,21229418-21229487,21230334-21230470,
21230855-21230932,21231912-21231998
Length = 343
Score = 111 bits (267), Expect = 5e-25
Identities = 64/178 (35%), Positives = 95/178 (53%)
Frame = +1
Query: 190 SLVIMAILPIFFGSFRSVKYLNEQKKAGERHETMSNKDALMFPLVASCALFGLYIFFQFF 369
++++ A L ++ G +RSVK ETMS + A+ FPLV S L L++ F+F
Sbjct: 29 NVILTACLAVYVGCYRSVKPTPPA-------ETMSKEHAMRFPLVGSAMLLSLFLLFKFL 81
Query: 370 SKEYINLLLTGYFFFLGVLALSHLLSPIISFLVPASIPNIPFHIHFTRGERDNKQDIINY 549
SK+ +N +LT YFF LG+ AL L P I +P + + R + ++
Sbjct: 82 SKDLVNTVLTAYFFILGIAALCATLLPSIKRFLPKEWND---NAIVWRAPLFHS---LSV 135
Query: 550 KFTSYDVICLLISLCLGAWYLLKKHWIANNLFGIAFAINGVELLHLNNVVTGCILLCG 723
+FT V+ + WY KKHW+ANN+ GI+F I G+E+L L + TG ILL G
Sbjct: 136 EFTRSQVVASIPGFFFCIWYAAKKHWLANNVLGISFCIQGIEMLSLGSFKTGAILLSG 193
>02_05_1289 -
35470076-35470243,35471032-35471108,35471935-35471971,
35472559-35472618,35472693-35472769,35473244-35473364,
35473505-35473597,35473708-35473770,35475195-35475245,
35475384-35475511,35476249-35476343,35476345-35476427,
35476653-35476808,35477046-35477182,35477243-35477252,
35477291-35477380,35477771-35478070,35479054-35479120,
35479382-35479469,35480317-35480373,35480469-35480592
Length = 693
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/59 (44%), Positives = 36/59 (61%)
Frame = +1
Query: 541 INYKFTSYDVICLLISLCLGAWYLLKKHWIANNLFGIAFAINGVELLHLNNVVTGCILL 717
++ +FT V+ + WY KKHW+ANN+ GIAF I G+E+L L + TG ILL
Sbjct: 404 LSVEFTKSQVVTSIPGFFFCIWYSAKKHWLANNVLGIAFCIQGIEMLSLGSFKTGAILL 462
>10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601
Length = 371
Score = 53.2 bits (122), Expect = 2e-07
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 7/187 (3%)
Frame = +1
Query: 181 AYLSLVIMAILPIFFGSFRSVKYLNEQKKA---GERHETMSNKDALMFPLVASCALFGLY 351
A L+L++ A+ + + R++ + E ++ E T+ ALM PL +SC+L L
Sbjct: 14 ASLALILTAVSVAYASASRALDHGREMERNLDFSEASITLDRSQALMIPLASSCSL--LL 71
Query: 352 IFFQFFSKEYINLLLTGYFFFLGVLALSHLLSPIISFLVPASIPNIPFHIHFTRGERDNK 531
+F+ F S ++ L+T + +AL LSP ++ + PF
Sbjct: 72 MFYLFSS---VSHLVTAFTAVASAMALFFCLSPYVNCVRSRLGVGDPF-----------V 117
Query: 532 QDIINYKFTSYDVICLLISLCLG---AWYLLKKHWIANNLFGIAFAINGVELLHLNNV-V 699
+ FT LL+++C+G AW L+ HW+ NNL GI+ I V + L N+ +
Sbjct: 118 SRCCSKPFTRLQG--LLVAICVGTVVAW-LVSGHWLLNNLLGISICIAFVSHVRLPNIKI 174
Query: 700 TGCILLC 720
+L+C
Sbjct: 175 CALLLVC 181
>02_05_1270 +
35360375-35360494,35361361-35361519,35361611-35361722,
35362306-35362422,35362570-35362721,35362804-35362986,
35363627-35363661,35363809-35363965,35364052-35364105,
35364196-35364288,35364373-35364515,35364753-35364823,
35365234-35365317,35365408-35365532,35366918-35366938
Length = 541
Score = 37.9 bits (84), Expect = 0.008
Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 3/141 (2%)
Frame = +1
Query: 304 ALMFPLVASCALFGLYIFFQFFSKEYINLLLTGYFFFLGVLALSHLLSPIIS-FLVPA-- 474
A++F ++ASC L LY + S ++ LL+ F GV L L ++S + PA
Sbjct: 245 AILFVVIASCFLIMLY---KLMSHWFVELLVV-IFCIGGVEGLQTCLVALLSRWFKPAAE 300
Query: 475 SIPNIPFHIHFTRGERDNKQDIINYKFTSYDVICLLISLCLGAWYLLKKHWIANNLFGIA 654
S +PF ++Y + C++ ++ + + WI ++ GIA
Sbjct: 301 SFVKVPFF------------GAVSYLTIAVCPFCIVFAVIWAVYRRMTYAWIGQDILGIA 348
Query: 655 FAINGVELLHLNNVVTGCILL 717
+ ++++ + N+ G +LL
Sbjct: 349 LIVTVIQIVRIPNLKVGSVLL 369
>11_06_0109 +
20202629-20205452,20206354-20206578,20207208-20208091,
20208692-20208814
Length = 1351
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 115 SVKETIQNVTEKPPSSIEGIAIAYLSLVIMAILPIFFGSFRSVKYLN 255
++ E I N+ + P S ++ + + Y + I ILPI G F S+ YL+
Sbjct: 356 NITELIDNLAKCPASKLQQLILKYNN--ITGILPISMGVFSSLVYLD 400
>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 680 RSSTPLMANAIPNRLLAIQCFLSKYQAPRQSEMSKQITS 564
+S T L A ++ +L + C L+KY PR + M K++ S
Sbjct: 1697 KSQTSLSALSLTENILTLLCILAKYHFPRDTGM-KEVDS 1734
>06_03_1505 +
30635572-30635802,30636977-30637135,30637217-30637328,
30638004-30638123,30638264-30638415,30638938-30638972,
30639077-30639233,30639328-30639381,30639502-30639594,
30639685-30639827,30639939-30640009,30640323-30640453
Length = 485
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/59 (20%), Positives = 28/59 (47%)
Frame = +1
Query: 541 INYKFTSYDVICLLISLCLGAWYLLKKHWIANNLFGIAFAINGVELLHLNNVVTGCILL 717
++Y + C++ ++ WI ++ GIA I ++++ + N+ G +LL
Sbjct: 288 VSYLTLAVSPFCIVFAVLWAVHRHFTYAWIGQDILGIALIITVIQIVRVPNLKVGSVLL 346
>08_02_0213 +
14349821-14350396,14351360-14351610,14351695-14352070,
14352210-14352341,14352425-14352600,14353176-14353299
Length = 544
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +1
Query: 55 HYFL*E-MADMASEIPINIEDSVKETIQNVTEKPPSSIE 168
+YF E + D+ ++I N+ V +Q++T+KPP+++E
Sbjct: 505 YYFEREFLVDVVNKICNNVR-GVNRVVQDITQKPPATVE 542
>05_07_0278 +
28911722-28911934,28912154-28913055,28913142-28913581,
28913628-28913955,28914101-28914743
Length = 841
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 329 DATNGNIRASLLDIVS*RSPAFFCSFRYFTDRNEPKN 219
DA G +R +L +V SP+F C+F + D E +N
Sbjct: 20 DAEMGAMRTMILKVVKDMSPSFCCNFIPWQDLVEVEN 56
>12_02_0797 -
23230441-23230757,23230922-23231069,23231352-23232562,
23232639-23232894,23234073-23234309
Length = 722
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = +1
Query: 577 LLISLCLGAWYLLKKHWIANNLFGIAFAIN-----GVELLHLNNVVTG 705
LL+ + L WYL K HW + + + FA++ V HL V+ G
Sbjct: 279 LLLMIILKKWYLGKTHWDPSVMEHLTFALSLCGQTSVLAKHLEEVLPG 326
>06_03_0577 +
22461831-22462023,22462378-22463160,22463380-22464936,
22465082-22465449
Length = 966
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 199 IMAILPIFFGSFRSVKYLN--EQKKAGERHETMSNKDALMFPLVASCALFG 345
I I+P+F GSF + YLN GE + ++A F +V + L G
Sbjct: 526 ISGIIPVFLGSFIGLTYLNLSFNNLIGEVPDDGIFRNATAFSIVGNVGLCG 576
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,805,257
Number of Sequences: 37544
Number of extensions: 371188
Number of successful extensions: 940
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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