Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26c16
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68751-5|CAA92975.1| 468|Caenorhabditis elegans Hypothetical pr... 64 1e-10
U53155-10|AAC48271.1| 346|Caenorhabditis elegans Seven tm recep... 29 0.10
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 32 0.36
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 32 0.36
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 32 0.36
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 32 0.36
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 32 0.36
AC006630-5|AAK68323.1| 335|Caenorhabditis elegans Collagen prot... 28 7.8
>Z68751-5|CAA92975.1| 468|Caenorhabditis elegans Hypothetical
protein T05E11.5 protein.
Length = 468
Score = 64.1 bits (149), Expect = 1e-10
Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 19/130 (14%)
Frame = +1
Query: 391 LLTGYFFFLGVLALSHLLSPIISF------LVPASIP-NIPFHIHFTRGERDNKQ-DIIN 546
LLT F GV A + LL P ++ LVP+ + N P+ +G ++ ++ DI +
Sbjct: 172 LLTFLICFEGVNAFASLLKPFVTAFLKKMPLVPSFLRFNAPYLFSLKKGNKEMEEGDIED 231
Query: 547 YK-----------FTSYDVICLLISLCLGAWYLLKKHWIANNLFGIAFAINGVELLHLNN 693
K F YD+I LL+ + +LLK+HWI NN+ G++F+I G+E LHL +
Sbjct: 232 AKKKETEYLFKIDFDRYDIIALLMCSPILISHLLKRHWITNNIIGVSFSILGIERLHLAS 291
Query: 694 VVTGCILLCG 723
G +LL G
Sbjct: 292 FKAGSLLLVG 301
Score = 48.4 bits (110), Expect = 5e-06
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Frame = +1
Query: 73 MADMASEIPINIEDSVKETIQNVTEKPPSSIEGIAIAYLSLVIMAILPIFFGSFRSVKYL 252
MA+ A+EIP T NVT + E A + L+L M+IL I GS RS +Y+
Sbjct: 1 MAEAATEIP--------PTASNVTV---FTFEEQATSSLALYGMSILCIIIGSIRSAQYI 49
Query: 253 N---EQKKAGERHETMSNKDALMFPLVASCALFGLYIFFQFFSKEYI 384
++K+ E TM ++A FP+ AS LFGLY+FF+ ++ ++
Sbjct: 50 RTNIDKKRLIEGSITM--REARKFPISASLVLFGLYLFFKPAAERFL 94
>U53155-10|AAC48271.1| 346|Caenorhabditis elegans Seven tm receptor
protein 139 protein.
Length = 346
Score = 28.7 bits (61), Expect(2) = 0.10
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 352 IFFQFFSKEYINLLLTGYFFFLGVLALSHLLSPIISFLVP-ASIPNI 489
+F FF KE+ N +L F V+ L HL P S + AS+ N+
Sbjct: 297 VFAIFFVKEFRNFVLCKKHFVANVIPLQHLPVPRNSLMTAHASLQNL 343
Score = 24.2 bits (50), Expect(2) = 0.10
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +1
Query: 172 IAIAYLSLVIMAILPIFFGSFRSVKYLNEQKKAGERHETMSNKDALMFPLVASCALFGLY 351
IA+ +L+++ A L I+F + ++E+ K R M+ +FP + G
Sbjct: 209 IALCFLTIIFCA-LKIYFKLKEDIHSMSERTKELNRQLMMTLTFQTIFPFFTMYSTVGAI 267
Query: 352 IFFQFFSKE 378
+ F E
Sbjct: 268 LTLPIFEIE 276
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 32.3 bits (70), Expect = 0.36
Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Frame = +1
Query: 70 EMADMASEIPINIEDS------VKETIQNVTEKPPSSIEGIAIAYL-SLVIMAILPIFFG 228
E+ + +EI NIE++ + + +TEK S++EGI +A S+ + + P+
Sbjct: 2591 EVEKLKAEIDANIEETRAKISEIAGKAEEITEKANSAMEGIRLARRNSVQLNKLAPVIVS 2650
Query: 229 SFRSVKYLNEQKKAGERHETMSNKDALMFPLVA 327
F +K L+ + A + +++S+K + + ++A
Sbjct: 2651 KFEELKKLSSARSA--KVDSVSDKVSQIKEMIA 2681
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 32.3 bits (70), Expect = 0.36
Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Frame = +1
Query: 70 EMADMASEIPINIEDS------VKETIQNVTEKPPSSIEGIAIAYL-SLVIMAILPIFFG 228
E+ + +EI NIE++ + + +TEK S++EGI +A S+ + + P+
Sbjct: 2591 EVEKLKAEIDANIEETRAKISEIAGKAEEITEKANSAMEGIRLARRNSVQLNKLAPVIVS 2650
Query: 229 SFRSVKYLNEQKKAGERHETMSNKDALMFPLVA 327
F +K L+ + A + +++S+K + + ++A
Sbjct: 2651 KFEELKKLSSARSA--KVDSVSDKVSQIKEMIA 2681
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 32.3 bits (70), Expect = 0.36
Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Frame = +1
Query: 70 EMADMASEIPINIEDS------VKETIQNVTEKPPSSIEGIAIAYL-SLVIMAILPIFFG 228
E+ + +EI NIE++ + + +TEK S++EGI +A S+ + + P+
Sbjct: 405 EVEKLKAEIDANIEETRAKISEIAGKAEEITEKANSAMEGIRLARRNSVQLNKLAPVIVS 464
Query: 229 SFRSVKYLNEQKKAGERHETMSNKDALMFPLVA 327
F +K L+ + A + +++S+K + + ++A
Sbjct: 465 KFEELKKLSSARSA--KVDSVSDKVSQIKEMIA 495
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 32.3 bits (70), Expect = 0.36
Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Frame = +1
Query: 70 EMADMASEIPINIEDS------VKETIQNVTEKPPSSIEGIAIAYL-SLVIMAILPIFFG 228
E+ + +EI NIE++ + + +TEK S++EGI +A S+ + + P+
Sbjct: 2591 EVEKLKAEIDANIEETRAKISEIAGKAEEITEKANSAMEGIRLARRNSVQLNKLAPVIVS 2650
Query: 229 SFRSVKYLNEQKKAGERHETMSNKDALMFPLVA 327
F +K L+ + A + +++S+K + + ++A
Sbjct: 2651 KFEELKKLSSARSA--KVDSVSDKVSQIKEMIA 2681
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 32.3 bits (70), Expect = 0.36
Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Frame = +1
Query: 70 EMADMASEIPINIEDS------VKETIQNVTEKPPSSIEGIAIAYL-SLVIMAILPIFFG 228
E+ + +EI NIE++ + + +TEK S++EGI +A S+ + + P+
Sbjct: 2591 EVEKLKAEIDANIEETRAKISEIAGKAEEITEKANSAMEGIRLARRNSVQLNKLAPVIVS 2650
Query: 229 SFRSVKYLNEQKKAGERHETMSNKDALMFPLVA 327
F +K L+ + A + +++S+K + + ++A
Sbjct: 2651 KFEELKKLSSARSA--KVDSVSDKVSQIKEMIA 2681
>AC006630-5|AAK68323.1| 335|Caenorhabditis elegans Collagen protein
165 protein.
Length = 335
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -2
Query: 627 PVLFKQVPSSKTERDEQTNHIIGCELVIDDILFVVSLTTGEMNMERNVWYRSW 469
PVLF V S + E D +TN C++ D+L + T G+ ++R + W
Sbjct: 35 PVLFTSVQSLQQEIDFETNF---CKMRSRDMLVNLYQTGGQNRVKRGWLFGQW 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,771,240
Number of Sequences: 27780
Number of extensions: 351843
Number of successful extensions: 1112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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