Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26c14
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    36   0.005
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    33   0.050
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    32   0.086
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    32   0.086
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    30   0.26 
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    29   0.46 
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    29   0.61 
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    28   1.4  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    27   1.9  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    27   3.3  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    25   7.5  
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    25   9.9  

>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 18/54 (33%), Positives = 35/54 (64%)
 Frame = +1

Query: 508 IVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSLPMLYV 669
           I+SI +L  A++P+ SA L++ FGR+  L +G + FI+  +   +A++   +Y+
Sbjct: 87  ILSIYLLVFAISPMISAPLSEVFGRRMLLQVGNVIFIVFNMACGLARTKAQMYI 140


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 32.7 bits (71), Expect = 0.050
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +1

Query: 496 QGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSLPMLYV 669
           Q   I S     + ++   S +LAD  GRK  LL     F+IG +++  ++++ M+ V
Sbjct: 121 QKELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVV 178


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 31.9 bits (69), Expect = 0.086
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +1

Query: 427 YGWPSPTLLYLESEESSIPTTAYQG--SWIVSIMILCSALTPIPSAYLADKF-GRKTTLL 597
           YG  +P L +   +   I     Q   S ++++  + +     P  +LADKF  RK  +L
Sbjct: 31  YGIITPILPFSLVDRVGISPDRVQSVISTLLAVYAVANIAASSPIGFLADKFLTRKVPML 90

Query: 598 LGAIPFIIGWILVIVAKSLPMLYV 669
           +G I       L+    S+PML V
Sbjct: 91  IGLIFLTSATALLTFGNSVPMLIV 114


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 31.9 bits (69), Expect = 0.086
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 496 QGSWIVSI-MILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSL 654
           Q SW  +  MI C+A  P+   +  D +GRK TLL     F IG  L   ++SL
Sbjct: 125 QVSWTATAYMISCTAFQPLFGKF-CDIYGRKKTLLAAYCVFGIGCFLCGTSRSL 177


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 505 WIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSL 654
           +I S   L + L  I +  LAD FGRK  + + +I  I+G I+ + A  L
Sbjct: 131 FITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHL 180


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +1

Query: 496 QGSWIV-SIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSLPMLYV 669
           Q S++V S+ I+ +A  P+    ++D FGRK   +   I +II  I   +A +LPM+ +
Sbjct: 125 QVSYLVQSLFIVGNAFGPMLLGPMSDIFGRKWVYVGSLILYIIFQIPQALAYNLPMMAI 183


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +1

Query: 484 TTAYQGSWIVSIM----ILCSALT-PIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAK 648
           TT +  S  VS++     LC  +  PI  A L++  GRK  LL+G   F I  I V VAK
Sbjct: 162 TTIFHISLTVSLLTMTVFLCGYIAGPIVWAPLSELSGRKLPLLIGMFGFGIFNISVAVAK 221

Query: 649 SL 654
            +
Sbjct: 222 DI 223


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 508 IVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSLPML 663
           + + +I  +A  P+    L+D FGR+ T++     F +G     +++SLP L
Sbjct: 72  VTAYLITNTAFQPLYGR-LSDIFGRRPTVVFANAAFTLGTFWCGISRSLPEL 122


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 511 VSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSLPMLYV 669
           +S+ +   A  PI  A +++  GRK  L++G   F I  I V VAK +  + +
Sbjct: 139 MSLYVCGFASGPILWAPISELVGRKIPLIVGMFMFSIFSIAVAVAKDVQTVMI 191


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/51 (39%), Positives = 23/51 (45%)
 Frame = +1

Query: 490 AYQGSWIVSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIV 642
           AYQ S  VS+          PS  L  KFG      L A+  IIGW LV +
Sbjct: 78  AYQYSAAVSVFYATYITAETPSVLLVKKFG--PHYYLSAM--IIGWSLVTI 124


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 511 VSIMILCSALTPIPSAYLADKFGRKTTLLLGAIPFIIGWILVIVAKSL 654
           +++ +L     PI  A L++  GRK  +L+G + F I  I V V K +
Sbjct: 177 MTVFLLGYCSGPIIWAPLSELSGRKPPILIGMLGFGIFNISVAVGKDI 224


>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 595 LLGAIPFIIGWILVIV 642
           L+G+I  IIGW LV+V
Sbjct: 232 LIGSILIIIGWCLVLV 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,068
Number of Sequences: 5004
Number of extensions: 46433
Number of successful extensions: 142
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)