Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26c08
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    27   2.5  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   4.3  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   4.3  
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ...    25   7.5  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 110 YLVPCFFNFNHQFINKRLLIFSYINYFKH 24
           YL+P +F+ N  F+N++L +   I +  H
Sbjct: 493 YLIPSYFDDNVIFVNEKLGVAQSIEWLLH 521


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 133 MLSAFCTCIWFLAFLILITNSLINGC*YFLI 41
           M +AF  C+ F+AFL L+    IN   YF++
Sbjct: 79  MFTAFL-CLTFVAFLYLLDRLYINCYEYFIV 108


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 64  LLMNW*LKLKKQGTKYRYKMRITFLLIGFLCGIQFVYGFE 183
           L++ W      + + + YK+RI  L  G +  I F  GF+
Sbjct: 196 LMVGWLCDTVGKSSLFSYKVRILLLDYGLVASIIFFSGFQ 235


>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -2

Query: 155 QRNPINRNVIRILYLYLVPCFF----NFNHQFINKRLLIFSYINYFK 27
           Q   + R  + I++L ++ C      +++ QF+N R+L  S  +Y K
Sbjct: 111 QHTGLKRKNMVIIFLEILMCLIGYVESYDRQFVNPRVLAESVDSYMK 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,934,916
Number of Sequences: 5004
Number of extensions: 33363
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)