Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26c08
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1165 + 31423674-31423881,31424073-31424200,31424996-314251...    28   4.4  
07_03_0823 + 21765960-21766064,21766166-21766327,21766616-217667...    28   5.8  
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851...    28   5.8  
01_01_0898 + 7078900-7079079,7080269-7080301,7080480-7080653,708...    28   5.8  

>04_04_1165 +
           31423674-31423881,31424073-31424200,31424996-31425100,
           31425350-31425442,31425904-31425978,31426284-31426346,
           31426537-31426646,31426810-31426817,31426831-31426997
          Length = 318

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 545 ASAYDASRQQSMPSSQYASQRGRAVIGTLEIVIFGCSIVRGVVSW 411
           A+ YD  R+ ++PSS+  S  G    G + + +  C+I R  + W
Sbjct: 248 ATEYDLRRRGTVPSSKGHSVAGLENKGCMLLFLVDCNIQRKQMEW 292


>07_03_0823 +
           21765960-21766064,21766166-21766327,21766616-21766741,
           21766831-21766956,21767519-21767698,21768204-21768452
          Length = 315

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 145 QSIEMLSAFCTCIWFLAF 92
           QSI++L   C CIW L+F
Sbjct: 86  QSIQLLYETCLCIWLLSF 103


>04_04_1690 -
           35382241-35382553,35382614-35382933,35383601-35385164,
           35385254-35385372,35385701-35385811,35386068-35386595,
           35386702-35386881,35386957-35387556,35387646-35388066,
           35388183-35388280,35388372-35389260,35389366-35389544,
           35389647-35389763,35389862-35389952,35390578-35390753
          Length = 1901

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 241 HLQHQTVQIQQNHHLPE*CLQNHKQTVFRREIQSIEML 128
           H+  + VQI ++H L +  + +H Q +  RE  SI+ L
Sbjct: 525 HVVEEPVQISEDHELEDFVITDHGQLLQLREKYSIQCL 562


>01_01_0898 +
           7078900-7079079,7080269-7080301,7080480-7080653,
           7080866-7083890,7084253-7084596
          Length = 1251

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 530 ASRQQSMPSSQYASQRGRAVIGTLEIVIFGCSIVRGVV 417
           AS   S+P  +Y + RG  + G +   ++  S +RG+V
Sbjct: 380 ASSPSSLPMLEYLNLRGNRLAGAVPPAVYNMSRLRGLV 417


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,132,807
Number of Sequences: 37544
Number of extensions: 196070
Number of successful extensions: 465
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)