Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26c04
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 56 4e-09
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 28 1.5
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 28 1.5
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 27 2.6
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 27 3.5
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 26 4.6
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 26 6.1
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 8.1
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 25 8.1
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac... 25 8.1
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 56.4 bits (130), Expect = 4e-09
Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 3/141 (2%)
Frame = +1
Query: 238 NEYITTTENNGTREITLNHEKTKNSLSLNMMNHLIEAINKNKEDISLRAIIISAKGNVFS 417
N+ + NG R TLN K N+++++M++ ++ + +E + II+ G FS
Sbjct: 55 NDTVLYESKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLEESNLAKVIILKGNGRSFS 114
Query: 418 AGHNLK--ELQSSSG-VDQHKEIFSKATELMKSIILSPVPVIAKVNGFATAAGCQLVATC 588
+G ++K L G + + + F++ L ++ PV+A +NG G L
Sbjct: 115 SGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGLAMHV 174
Query: 589 DIIVCSDSSKFSTPGANFGIF 651
+ + + F+ P G F
Sbjct: 175 PFRIACEDTMFAMPETGIGYF 195
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +1
Query: 184 FVQKTGSRSLSVLRRFVHNEYITTTENNGTREITLNHEKTKNSLSLNMM 330
F+Q + LR VH+++I + N HE K + L +M
Sbjct: 405 FLQSLSQEEIDDLRAMVHSDHIYSRLTNSLAPSVYGHEIIKKGILLQLM 453
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 517 SPVPVIAKVNGFATAAGCQLVATCDIIVCSDSSKFSTPGA 636
S + V +V F+TA L+A+ D + SS PG+
Sbjct: 5 SSITVTVRVRPFSTAESANLIASSDRLSFGTSSSLRNPGS 44
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 243 IYNYYRK*WNKRNHIES*KDQEFTITEHDEPFDRSYQ*KQRGH 371
++N RK WN+R KD+ + T P S++ +RGH
Sbjct: 34 LFNAIRKLWNERRRYRMPKDESISPT----PISYSFRSLRRGH 72
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 109 RYLPTSNKLYFYLTYSIHIFYIMFSF 186
++L +K YL SIH+FY+ SF
Sbjct: 161 KFLCPLSKYLIYLFLSIHLFYVFQSF 186
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 174 HVQFCSEDRIKVIVGTTPFCSQ 239
H+ +C ++I V +GTTP +Q
Sbjct: 195 HINYCKANKIGVGIGTTPRIAQ 216
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 337 LIEAINKNKEDISLRAIIISAKGNVFSAGHNLKEL 441
L + +++ +ED SL I S K NVFS N+ ++
Sbjct: 40 LPDRVHERREDWSLFFIHFSKKSNVFSLFSNVDDI 74
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 394 SAKGNVFSAGHNLKELQSSSGVDQHKEIFSKATELMKSIILSPVPVIAKVN 546
+ KGN+ SAG L+ + + +++F +L+++ L V I N
Sbjct: 254 NTKGNIHSAGSGLRRYNEQALIKDIQQVFKDWGKLLETCDLIFVRAIGSSN 304
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 88 YSNYLVARYLPTSNKL-YFYLTYSIHIFYIMFSFVQKTGSRSLSVLRRFVHNEY 246
Y YL Y+P + Y + + + F I+FS + S + V F+H +Y
Sbjct: 323 YRLYLPDSYIPIHPVVAYAFYVWILPAFRILFSIFMASMSVIIVVSEVFLHTQY 376
>SPAC821.12 |orb6||serine/threonine protein kinase
Orb6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 210 IVGTTPFCSQ*IYNYYRK*WNKRNHIES*KDQEFTITEHD 329
++G PFCS+ + YRK N R + D +I D
Sbjct: 326 LIGWPPFCSENSHETYRKIINWRETLTFPNDIHLSIEARD 365
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,529
Number of Sequences: 5004
Number of extensions: 50656
Number of successful extensions: 138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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