Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26c04
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0164 + 26405052-26405208,26405304-26405473,26406278-264063... 64 8e-11
03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798 62 4e-10
01_06_0729 - 31546464-31546574,31546653-31546694,31546795-315468... 56 4e-08
01_06_0153 - 27044553-27044669,27044842-27044964,27045066-270451... 55 5e-08
01_01_0746 + 5772340-5773083 44 9e-05
02_05_0163 + 26400486-26400621,26401477-26401646,26402623-264027... 35 0.055
11_03_0046 - 9309754-9309820,9310414-9311132 32 0.39
06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499 31 0.68
06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908 31 1.2
01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077 29 4.8
08_02_1375 - 26524373-26525440,26525566-26525739,26526557-26526751 28 6.4
03_05_0100 - 20779387-20779641,20779824-20780629,20780757-207810... 28 8.4
>02_05_0164 +
26405052-26405208,26405304-26405473,26406278-26406352,
26406570-26406660,26406768-26406848,26407192-26407353,
26407425-26407501,26407670-26407846
Length = 329
Score = 64.5 bits (150), Expect = 8e-11
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
Frame = +1
Query: 262 NNGTREITLNHEKTKNSLSLNMMNHLIEAINKNKEDISLRAIII-SAKGNVFSAGHNLKE 438
++G E+ L + +N++ M+ L AI K K D + + +++ S+ VF AG +LKE
Sbjct: 51 DSGIVEMRLERPEARNAIGREMLQGLRSAIEKVKADATAKVVLLASSVPKVFCAGADLKE 110
Query: 439 LQSSSGVDQHKEIFSKATELMKSIILSPVPVIAKVNGFATAAGCQLVATCDIIVCSDSSK 618
+ S + + + S + + LS +P IA V G A G +L +CD+ +C +++
Sbjct: 111 RRLMSPCEVREFVNSLRSTFLSFEALS-IPTIAIVEGAAFGGGLELALSCDLRICGENAT 169
Query: 619 FSTPGANFGI 648
FS P I
Sbjct: 170 FSLPETGLAI 179
>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
Length = 268
Score = 62.1 bits (144), Expect = 4e-10
Identities = 36/126 (28%), Positives = 61/126 (48%)
Frame = +1
Query: 280 ITLNHEKTKNSLSLNMMNHLIEAINKNKEDISLRAIIISAKGNVFSAGHNLKELQSSSGV 459
+T+N K N+L+ MM L A + D + A++++ +G F +G +L +
Sbjct: 26 VTINRPKALNALTRPMMVSLAAAFRRLDADDGVAAVVLAGRGRAFCSGVDLTAAEEVFKG 85
Query: 460 DQHKEIFSKATELMKSIILSPVPVIAKVNGFATAAGCQLVATCDIIVCSDSSKFSTPGAN 639
D + A + + + P++ + GFA AG ++ CDI+V S+KF A
Sbjct: 86 D----VKDPAADPVVQMERCRKPIVGAIAGFAVTAGFEIALACDILVAGRSAKFIDTHAK 141
Query: 640 FGIFCS 657
FGIF S
Sbjct: 142 FGIFPS 147
>01_06_0729 -
31546464-31546574,31546653-31546694,31546795-31546896,
31547148-31547246,31547522-31547582,31547659-31547807,
31547963-31548048,31548249-31548333,31548642-31548725,
31548820-31548893,31549035-31549095,31549546-31549614,
31549712-31549795,31549893-31549937
Length = 383
Score = 55.6 bits (128), Expect = 4e-08
Identities = 35/137 (25%), Positives = 58/137 (42%)
Frame = +1
Query: 238 NEYITTTENNGTREITLNHEKTKNSLSLNMMNHLIEAINKNKEDISLRAIIISAKGNVFS 417
+E + E G R LN + N +S ++ L + + ++D + +I G FS
Sbjct: 14 DEVVLGQETGGARVAILNRPRQLNVISDRVVYLLAQFLESWEKDEDAKLVIFKGAGRAFS 73
Query: 418 AGHNLKELQSSSGVDQHKEIFSKATELMKSIILSPVPVIAKVNGFATAAGCQLVATCDII 597
AG +LK D E+ + L I +A VNG G +VA
Sbjct: 74 AGGDLKMFYEGKSDDSCLEVVYRMYWLCYHIHTYKKTAVALVNGLVMGGGAAMVAPLKFA 133
Query: 598 VCSDSSKFSTPGANFGI 648
V ++ + F+TP A+ G+
Sbjct: 134 VVTEKTVFATPEASVGL 150
>01_06_0153 -
27044553-27044669,27044842-27044964,27045066-27045161,
27045323-27045370,27046360-27046458,27046554-27046592,
27047032-27047133,27047225-27047347,27047535-27047783
Length = 331
Score = 55.2 bits (127), Expect = 5e-08
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Frame = +1
Query: 268 GTREITLNHEKTKNSLSLNMMNHLIEAINKNKEDISLRAIIISAKGNVFSAGHNLKELQS 447
G +IT+N +N+ + L+ A ++D S+ II++ KG + L+
Sbjct: 80 GIAKITINRPDRRNAFRPLTVKELMRAFEDARDDSSIGVIILTGKGTQSFCSGGDQALRD 139
Query: 448 SSG-VDQHKEIFSKATELMKSIILSPVPVIAKVNGFATAAGCQLVATCDIIVCSDSSKFS 624
+ G VD +L I P PVIA V G+A G L CD+ + +D++ F
Sbjct: 140 ADGYVDFDSFGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFG 199
Query: 625 TPGANFGIFCSTPGIAL 675
G G F + G ++
Sbjct: 200 QTGPKVGSFDAGYGTSI 216
>01_01_0746 + 5772340-5773083
Length = 247
Score = 44.4 bits (100), Expect = 9e-05
Identities = 25/80 (31%), Positives = 39/80 (48%)
Frame = +1
Query: 382 AIIISAKGNVFSAGHNLKELQSSSGVDQHKEIFSKATELMKSIILSPVPVIAKVNGFATA 561
A++I+ +G FS G +L + + + H + L+ ++ PVP +A V G A A
Sbjct: 54 ALVIAGEGKYFSNGFDL-DWARTVPAELHASMGGAFRGLVADLLALPVPTVAAVTGHAAA 112
Query: 562 AGCQLVATCDIIVCSDSSKF 621
AGC L D +V S F
Sbjct: 113 AGCALALAHDAVVMRASRGF 132
>02_05_0163 +
26400486-26400621,26401477-26401646,26402623-26402713,
26402822-26402873,26403462-26403565,26403648-26403724,
26403890-26404069
Length = 269
Score = 35.1 bits (77), Expect = 0.055
Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 1/131 (0%)
Frame = +1
Query: 277 EITLNHEKTKNSLSLNMMNHLIEAINKNKEDISLRAIII-SAKGNVFSAGHNLKELQSSS 453
E+ L + KN+++ M L + K + D +++ +++ S+ VF AG +LK L
Sbjct: 49 ELRLERPEVKNAINWEAMRLLRGVVEKVEADDTVKVVLVTSSVPGVFCAGADLKALS--- 105
Query: 454 GVDQHKEIFSKATELMKSIILSPVPVIAKVNGFATAAGCQLVATCDIIVCSDSSKFSTPG 633
+P IA + G A G +L +CD+ +C +++ P
Sbjct: 106 -----------------------IPTIAVIEGAALGGGLELALSCDLRICGENATLGLPE 142
Query: 634 ANFGIFCSTPG 666
I G
Sbjct: 143 TGLAIIPGAGG 153
>11_03_0046 - 9309754-9309820,9310414-9311132
Length = 261
Score = 32.3 bits (70), Expect = 0.39
Identities = 24/124 (19%), Positives = 54/124 (43%)
Frame = +1
Query: 265 NGTREITLNHEKTKNSLSLNMMNHLIEAINKNKEDISLRAIIISAKGNVFSAGHNLKELQ 444
+G +T+ L+ + LI ++ ++ LR ++ +++ F G +
Sbjct: 11 DGIFVLTMASSDGHQYLTDEAIGDLIASLTAVRDTPGLRGLVTTSRLGSFCDG-----VD 65
Query: 445 SSSGVDQHKEIFSKATELMKSIILSPVPVIAKVNGFATAAGCQLVATCDIIVCSDSSKFS 624
+ +++ ++ E+++ ++ P P A VNG AT+ G L D V + + +
Sbjct: 66 HDAARQPDEQVAARVGEVVRLLLEMPAPTAAAVNGDATSLGLALALAHDHCVVWEGAAVA 125
Query: 625 TPGA 636
P A
Sbjct: 126 LPEA 129
>06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499
Length = 524
Score = 31.5 bits (68), Expect = 0.68
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +1
Query: 133 LYFYLTYSIHIFYIMFS----FVQKTGSRSLSVLRRFVHNEYITTTENNGTREITLNHEK 300
L+ +S +F+++FS + + S S +VLR TTT T TL+ +
Sbjct: 65 LFLGFRFSRLLFFLLFSTTALYSSTSSSSSSAVLRATTTTTTTTTTTTTTTNTFTLSFQA 124
Query: 301 TKNSLSLNMMNH 336
N N+ NH
Sbjct: 125 NPNPPPSNLSNH 136
>06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908
Length = 88
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +1
Query: 265 NGTREITLNHEKTKNSLSLNMMNHLIEAINKNKEDISLRAIII-SAKGNVFSAGHNLKEL 441
NG ITL+ K N+++L M +++ + + S++ +++ S+ FSAG ++K L
Sbjct: 17 NGVAVITLDRPKALNAMNLEMDLRYKAFLDEWETNPSVKCVLVESSSPRAFSAGGDVKRL 76
Query: 442 QSSSGVDQHKEI 477
+ + + E+
Sbjct: 77 ANDCTMPEIIEV 88
>01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077
Length = 247
Score = 28.7 bits (61), Expect = 4.8
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Frame = +1
Query: 103 VARYLPTSNKLYFYLTYSIH-IFYIMFSFV--QKTGSRSLSVLRRFVHNEYITTT----- 258
VA +LPT+ LYF++ + H +F + S + +K + L + Y TT
Sbjct: 69 VAHHLPTTLSLYFFIYFIGHGVFPTVHSLMKSKKDFPKVLLISSVLCSLNYAVTTLLRYL 128
Query: 259 --ENNGTREITLNHEKTKNSLSLNMMNHLIEAINKNKEDISLRAIIISAKGNVFSA 420
+ ++TLN K + ++ LI + K +I L A +I K ++ +A
Sbjct: 129 IYGEDVQAQVTLNLPSGKLYTRITILTTLISLLEKYGLEIQLIATVIKEKLSLTTA 184
>08_02_1375 - 26524373-26525440,26525566-26525739,26526557-26526751
Length = 478
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 397 AKGNVFSAGHNLKELQSSSGVDQHKEIFSKATELMKSIILSPVPVIAKVNG 549
A +V A ++++ + + V++ +EIF+ A ELM + SPV V G
Sbjct: 34 APRSVVRAAISVEKGEKAYTVEKSEEIFNAAKELMPGGVNSPVRAFKSVGG 84
>03_05_0100 -
20779387-20779641,20779824-20780629,20780757-20781011,
20781107-20781221,20781301-20781353,20781517-20781777,
20782804-20782854,20783081-20783329,20784765-20784990,
20785968-20786132
Length = 811
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +1
Query: 145 LTYSIHIFYIMFSFVQKTGSRSL---SVLRRFVHNEYI 249
L + + I+Y+ F+ S S+ +VL +FVH EY+
Sbjct: 479 LVWKVSIWYVALFFIVFMSSESIYLSAVLYQFVHGEYV 516
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,448,978
Number of Sequences: 37544
Number of extensions: 280272
Number of successful extensions: 721
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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