Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26c04
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   3.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   3.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   3.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   5.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.7  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 568 CQLVATCDIIVCSDS 612
           C+L  TCD++ C+ S
Sbjct: 109 CKLWLTCDVLCCTAS 123


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 568 CQLVATCDIIVCSDS 612
           C+L  TCD++ C+ S
Sbjct: 109 CKLWLTCDVLCCTAS 123


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 130 KLYFYLTYSIHIFYI--MFSFVQKTGSRSLSVLRRFVHNEYITTT 258
           K+ F L +    F+     +F ++TG  +LSV   F+ N ++  T
Sbjct: 54  KMDFTLDFYFRQFWTDPRLAFKKRTGVETLSVGSEFIKNIWVPDT 98


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 568 CQLVATCDIIVCSDS 612
           C+L  TCD++ C+ S
Sbjct: 109 CKLWLTCDVLCCTAS 123


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 703 VALDYXQIFQEQFQVWNRIYQSLH 632
           + LDY  +   QFQ ++  +Q LH
Sbjct: 177 IPLDYIFLIFNQFQDFSESFQILH 200


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 703 VALDYXQIFQEQFQVWNRIYQSLH 632
           + LDY  +   QFQ ++  +Q LH
Sbjct: 177 IPLDYIFLIFNQFQDFSESFQILH 200


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 703 VALDYXQIFQEQFQVWNRIYQSLH 632
           + LDY  +   QFQ ++  +Q LH
Sbjct: 177 IPLDYIFLIFNQFQDFSESFQILH 200


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 181 SFVQKTGSRSLSVLRRFVHNEYITTT 258
           +F ++TG  +LSV   F+ N ++  T
Sbjct: 73  AFKKRTGVETLSVGSEFIKNIWVPDT 98


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 181 SFVQKTGSRSLSVLRRFVHNEYITTT 258
           +F ++TG  +LSV   F+ N ++  T
Sbjct: 12  AFKKRTGVETLSVGSEFIKNIWVPDT 37


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 684 RSSKSNSRCGTEYTKV 637
           RS +SNSRC  +  K+
Sbjct: 324 RSPESNSRCSVKREKI 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,999
Number of Sequences: 438
Number of extensions: 3868
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)