Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26b17
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    31   0.79 
AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine re...    29   3.2  
AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical...    28   7.4  
AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    28   7.4  
U28941-7|AAC71104.1|  330|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched relat...    27   9.8  

>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +3

Query: 330 ILSSFYCFVLLYFGAYCINSIWPVCLRPLDLRILLPNYFLTIFVHAHSNYYF 485
           I S+ +    + FG +   SIW V + P+    LL +   ++ + AH +Y++
Sbjct: 680 IFSAVFALFSVNFGVFGFLSIWGVGMDPVSTASLLMSIGFSVDISAHISYHY 731


>AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine
           receptor, class z protein20 protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = +1

Query: 436 QIIFLRYLCMHIVIIILLYDMYKIS**LLPIFVLIFRVL 552
           QIIFL  +C  I+ IIL Y +   S  +L + V+IF VL
Sbjct: 75  QIIFL-CMCTVIIFIILAYTLRSTSLVILTLAVMIFVVL 112


>AL132862-12|CAB60542.1|  380|Caenorhabditis elegans Hypothetical
           protein Y73F8A.17 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 180 TNQ*RIQTQKSN*TYHWHPSGHYSNKYTHVFKNIES 73
           TN  R+Q + S+ + H  PS  Y N+Y H +  + +
Sbjct: 236 TNSGRLQNEISS-SIHQFPSTSYQNQYPHAYPTVNT 270


>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 180 TNQ*RIQTQKSN*TYHWHPSGHYSNKYTHVFKNIES 73
           TN  R+Q + S+ + H  PS  Y N+Y H +  + +
Sbjct: 236 TNSGRLQNEISS-SIHQFPSTSYQNQYPHAYPTVNT 270


>U28941-7|AAC71104.1|  330|Caenorhabditis elegans Hypothetical
           protein F31D5.6 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 444 NNLAVKFVNLKALNTLAKYY*YNR-PRNIIKQNNKTMRVLITRALLRTACKTHLYLAKIN 268
           N   ++ V LK ++T + +  +N  P  +  +  K M  LITR LLR+  +T   L    
Sbjct: 38  NQAVIEIVALKNMSTCSTFEFWNLLPEEMKLECIKNMS-LITRCLLRSTSQTERRLVNSQ 96

Query: 267 KI 262
           KI
Sbjct: 97  KI 98


>AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched related
           family protein 16 protein.
          Length = 881

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +3

Query: 330 ILSSFYCFVLLYFGAYCINSIWPVCLRPLDLRILLPNYFLTIFVHAHSNYYF 485
           IL+S    + +  G + + S+W V L P+ +   L +   ++   AH +Y++
Sbjct: 638 ILTSTIAMISINIGVFGLLSMWRVNLDPITMCTTLMSIGFSVDFTAHISYHY 689


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,619,661
Number of Sequences: 27780
Number of extensions: 268694
Number of successful extensions: 704
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)