Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26b16
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.09 |||mitochondrial type II fatty acid synthase componen...    74   2e-14
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    29   0.84 
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    28   1.5  
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    27   2.6  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    27   3.4  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    26   4.5  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   4.5  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   5.9  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    25   7.9  

>SPAC4H3.09 |||mitochondrial type II fatty acid synthase
           component|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
 Frame = +1

Query: 295 KSRVLLVLQLYDKI-NPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERL 471
           + R+L V+  +DKI +P+++T  S F NDLGLDSLD VEV+MA+E+EF  +IPD DA+ +
Sbjct: 36  EKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDADEI 95

Query: 472 VRPKDIVQYI 501
               D + YI
Sbjct: 96  TSVGDAISYI 105


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 17/72 (23%), Positives = 33/72 (45%)
 Frame = +1

Query: 286 DLIKSRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAE 465
           DL+ + +     LY ++  ++      F     + SLD+   I+ M+   GFEI     E
Sbjct: 256 DLVTTTITFTPLLYAQLYQQRCKTFRPFHLPSDVHSLDYERAILGMKLSCGFEILYNSKE 315

Query: 466 RLVRPKDIVQYI 501
            + +  +I +Y+
Sbjct: 316 NVEKRTEIDEYL 327


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 298 SRVLLVLQLYDKINPEQLTVDSHFMNDLGLDSLDHVEVIMAMEDEF 435
           S+VLL LQ    I P  L  + + M +LG +  D+ E ++  + ++
Sbjct: 296 SQVLLTLQSVKDIEPPALWQEPNSMEELGKELKDNKEQLVKQDQKY 341


>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 231 WERETWYPQVQRWPSPHLRPYK 296
           WE + + P   RW   H +P+K
Sbjct: 156 WENDVYGPNEDRWDENHAQPHK 177


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 66  NGCCEYFPKCFRW 104
           NG CE++ K FRW
Sbjct: 326 NGACEHYKKSFRW 338


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +2

Query: 44  KHFVSLKKWLLRIFSEVLSVVYYGDQQRIERP*HVVFRPL 163
           KH V  + W     SEVL  + Y D        H  F P+
Sbjct: 164 KHIVDARMWTEAYMSEVLRSLLYSDDTNSRFAGHRRFNPI 203


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -3

Query: 501 NVLDNVFWSDQSLCIT--IRYLKSKFIFHCH 415
           N LDNVF S + L  +  + YL+ +F FHC+
Sbjct: 64  NKLDNVFSSLEWLTKSDAVIYLEDQFHFHCY 94


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 237  RETWYPQVQRWPSPHLRPYKK 299
            +ETWY ++QRW    L  Y+K
Sbjct: 1296 KETWYEKLQRWEDA-LSAYEK 1315


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 29  C*KKIKHFVSLKKW--LLRIFSEVLSVVYYGDQQRI 130
           C K IKHF  LKKW  +   FSEV     +G   RI
Sbjct: 152 CGKGIKHF--LKKWENMPMAFSEVFLFNIFGGALRI 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,937
Number of Sequences: 5004
Number of extensions: 51930
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)