Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26b14
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    48   2e-06
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    28   1.4  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   1.8  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    27   3.2  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    26   4.3  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    26   5.6  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    26   5.6  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.6  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   5.6  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   5.6  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    25   7.5  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    25   9.9  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    25   9.9  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 50/181 (27%), Positives = 74/181 (40%), Gaps = 12/181 (6%)
 Frame = +3

Query: 162 NKNTKYFSFQGIPYAKPPVGARRFXXXXXXXXXXXXFYAYEE-GPACPSRDITYGSITVK 338
           N   K   F GI YAKPPVG  R+               Y +    CP          V+
Sbjct: 13  NGKEKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVR 72

Query: 339 RKGM--SENCIYANVFVPASATLNSDELCEDNSLPILVNIHGGGFQTGSG-NRDLHGPEL 509
                  E+C++ N++VPA      ++  E    P+L  IHGG  Q G+  +     P+ 
Sbjct: 73  NPDFKYDEDCLFLNIWVPA-----GEKPAE--GWPVLYFIHGGWLQVGNPLHYRQCDPQD 125

Query: 510 LML----KDVIVVNFNYRLAIFGYLS----LASHKIPGNNGLRDMVTLLKWVQRNAKVFG 665
           L         I+V+  +RL +FG+L+    L       N G  D    L+W  ++ + FG
Sbjct: 126 LQADGSPAKFILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFG 185

Query: 666 G 668
           G
Sbjct: 186 G 186


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +3

Query: 270 FYAYEEGPACPSRDITYGSI---TVKRKGMSENCIYANVFVPASATLNSDELCEDNSLPI 440
           F   E+     ++DI+Y S+   + KR+G+S   I AN   P   + NS  +      PI
Sbjct: 125 FEGEEQSSTGNNQDISYSSVNSLSPKRRGISLMSIDANKLSPKKTSPNSGYITSPLRHPI 184

Query: 441 LVN 449
           L++
Sbjct: 185 LLS 187


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 558 IFGYLSLASHKIPGNNGLRDMVTLLKWV 641
           I GYLSL+  K  GN+ +     LL WV
Sbjct: 50  ISGYLSLSKSKALGNSSVAGSDILLSWV 77



 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 163 FALSSLPHTGPESNFTSTS 107
           F +  LPH  P+S FT T+
Sbjct: 489 FQIEDLPHPDPQSTFTGTN 507


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 257 WLKWLQFRKSSGAYGWL 207
           WL WL F KSS    WL
Sbjct: 193 WLSWLSFSKSSPVVLWL 209


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
 Frame = -3

Query: 503 RSMQISIARSCLEPTTVDI----HQYGQ*IVFAKFIAVQSRRRRYKYISINTVFTHS 345
           R  +I+++ S + PT+VDI      + + IV  +F  VQS  R Y YIS+  V THS
Sbjct: 48  RRSKIALS-SFIIPTSVDILVKVAGFQRYIVNVEFSNVQSYFRYYNYISLYFV-THS 102


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 168 FCLRSPLSRTQVPSLTSPAHHIF 100
           FCL  P+  T +PS  S   H+F
Sbjct: 310 FCLYLPIPLTSIPSTPSIRSHVF 332


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 383 YKYISINTVFTHSFAFDGNTAVSNISRRTGRPFFVS 276
           Y+YIS N V+  + A       S I+  T   FF +
Sbjct: 98  YEYISFNKVYEIALALGSGLVASGITSETTMLFFAA 133


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 214 GGFAYGMPWKLKYLVFLFALSSLPHTGPESNFTSTSHFL 98
           GGF YG+   ++  +FLF    +    P ++  S   F+
Sbjct: 85  GGFMYGVGGTIQITLFLFLAIQIKKKAPAAHTVSECFFI 123


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 110 CAGEVRLGTCVRERGERKQKYQI 178
           CAGE+ L  C+++  ER  K +I
Sbjct: 607 CAGEIHLERCLKDLRERFAKIEI 629


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 419  RRQFTAHIGEYPRWWV 466
            R QF  H G+ P WW+
Sbjct: 1477 RSQFLHHFGKNPSWWL 1492


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 339 RKGMSENCIYANVFVPASATLNSDELCEDNSLPILVNI 452
           RKG     I A    P     +   LCEDN++P L  +
Sbjct: 66  RKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTV 103


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 208 FAYG-MPWKLKYLVFLFALSSLPHTGPESNFTSTSHFLVKD 89
           F YG +P +   +V     +++PH GP +     S F++ D
Sbjct: 265 FVYGGLPVQESPIVLFGERAAMPHGGPSNRRLKKSEFVLMD 305


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 41  SSVTLILIGVFSDICRVL 94
           SS TL+++GV S IC +L
Sbjct: 308 SSATLLIVGVLSHICFLL 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,221
Number of Sequences: 5004
Number of extensions: 61676
Number of successful extensions: 179
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)