Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26b08
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    46   5e-06
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.7  

>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 24/83 (28%), Positives = 41/83 (49%)
 Frame = +1

Query: 418 TLGISGILYCAQDLLLYYPNDPPDSRVFVLQPSNYKLPYESIKINNKDGLKIHMFLVKQP 597
           TL   G LY  Q  L+Y    P  SR  V  P  + + YE I++  +D + +  +L+ Q 
Sbjct: 24  TLIALGFLYKYQKTLVYPSAFPQGSRENVPTPKEFNMEYERIELRTRDKVTLDSYLMLQS 83

Query: 598 FNSKYIPTMIFFHGKCWKYGAKV 666
            + +  PT+++FH      G ++
Sbjct: 84  ESPESRPTLLYFHANAGNMGHRL 106


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = -2

Query: 609  FAIEWLLYKKHVYF*SIFIVNFYTFIWQLVITWLKNKNS*VRWIIGIV 466
            +A  W  +  H +   + ++ FY  IW  ++  L + +    WI+ I+
Sbjct: 2207 WAFMWSAHNVHKWAMFLLVILFYVAIWIALVALLASLSRYHSWILPIL 2254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,874
Number of Sequences: 5004
Number of extensions: 61199
Number of successful extensions: 155
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)