Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26b06
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 218 5e-58
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 113 3e-26
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 112 3e-26
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 111 1e-25
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 105 5e-24
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 98 8e-22
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 98 8e-22
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 98 1e-21
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 91 9e-20
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 90 2e-19
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 75 6e-15
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 71 1e-13
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 68 1e-12
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 50 2e-07
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 28 1.3
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 3.0
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 5.2
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 25 6.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.1
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 9.1
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 218 bits (533), Expect = 5e-58
Identities = 98/112 (87%), Positives = 102/112 (91%)
Frame = +2
Query: 296 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 475
MALKRINREL DLG+DPP+ CSAGP G+DLFHWQATIMGP DSPY GGVFFL+IHFPTDY
Sbjct: 1 MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 476 PFKPPKVAFTTRIYHPNIXSNGSICLDXLRAQWSPALTISKVLLSICSLLCD 631
PFKPPKV FTTRIYHPNI SNGSICLD LR QWSPALTISKVLLSICSLL D
Sbjct: 61 PFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTD 112
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 113 bits (271), Expect = 3e-26
Identities = 48/114 (42%), Positives = 73/114 (64%)
Frame = +2
Query: 290 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 469
S A +R+ R+ + + +DPPA SA P +++ W A I+GP D+P++ G F L + F
Sbjct: 2 STTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDE 61
Query: 470 DYPFKPPKVAFTTRIYHPNIXSNGSICLDXLRAQWSPALTISKVLLSICSLLCD 631
YP KPP V F + ++HPN+ +NG +CLD L+ +WSP ++ +L SI SLL D
Sbjct: 62 QYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLND 115
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 112 bits (270), Expect = 3e-26
Identities = 50/109 (45%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Frame = +2
Query: 305 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 484
+RI +EL D+ +D A +D+ H + GP +PY+GG F + I P DYPF+
Sbjct: 7 RRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFR 66
Query: 485 PPKVAFTTRIYHPNIXS-NGSICLDXLRAQWSPALTISKVLLSICSLLC 628
PPK+ F T+IYHPN+ S G+ICLD L+ QWSP T+ L+S+ SLLC
Sbjct: 67 PPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLC 115
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 111 bits (266), Expect = 1e-25
Identities = 54/111 (48%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Frame = +2
Query: 296 MAL-KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTD 472
MAL KRI +E++ L RDPP A P ++L +++ T+ GP S Y+GG F L + P +
Sbjct: 1 MALPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDE 60
Query: 473 YPFKPPKVAFTTRIYHPNIXSNGSICLDXLRAQWSPALTISKVLLSICSLL 625
YP PP V F T+IYHPN+ G ICL L+ WSPAL I VLLSI +L+
Sbjct: 61 YPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALM 111
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 105 bits (252), Expect = 5e-24
Identities = 48/113 (42%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Frame = +2
Query: 290 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 469
S + +R+ +E DL P ++LFHW T +GP DS Y GG F ++ FP
Sbjct: 5 SPSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPL 64
Query: 470 DYPFKPPKVAFTTRIYHPNIXSNGSICLDXLRAQ-WSPALTISKVLLSICSLL 625
DYPF+PP + FTTRIYHPN S G++CL L+ Q + P++ + VL I LL
Sbjct: 65 DYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLL 117
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 98.3 bits (234), Expect = 8e-22
Identities = 41/83 (49%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +2
Query: 380 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-XSNGSICLD 556
D+FHW+A I GP ++PY+GG + L IH YP PP V F T+I HPNI +NG +C+D
Sbjct: 33 DMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMD 92
Query: 557 XLRAQWSPALTISKVLLSICSLL 625
L+ WSPA ++ L+I SLL
Sbjct: 93 ILKTHWSPAWSLQSACLAIISLL 115
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 98.3 bits (234), Expect = 8e-22
Identities = 45/126 (35%), Positives = 73/126 (57%), Gaps = 14/126 (11%)
Frame = +2
Query: 296 MALKRINRELQDLGRDPPAQCSAGPHGED-LFHWQATIMGPVDSPYQGGVFFLTIHFPTD 472
MAL+R+ +E ++L + P +AGP ED F W I GP +P++GG++ T+ FP+D
Sbjct: 5 MALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSD 64
Query: 473 YPFKPPKVAFTTRIYHPNIXSNGSICLDXLRA-------------QWSPALTISKVLLSI 613
YP PP + F +HPN+ +G++C+ L A +WSP ++ K+LLS+
Sbjct: 65 YPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSV 124
Query: 614 CSLLCD 631
S+L +
Sbjct: 125 MSMLAE 130
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 97.9 bits (233), Expect = 1e-21
Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
Frame = +2
Query: 305 KRINRELQDLGRDPPAQCSAGPHGE-DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPF 481
KR+ EL L SA P + +L HW TI GP D+ Y+G F +++ FP +YP+
Sbjct: 31 KRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPY 90
Query: 482 KPPKVAFTTRIYHPNIXSNGSICLDXLRAQWSPALTISKVLLSICSLL 625
PP + FT+ ++HPN+ +G+ICLD L+ +WS + +LLS+ SLL
Sbjct: 91 SPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLL 138
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 91.5 bits (217), Expect = 9e-20
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 7/121 (5%)
Frame = +2
Query: 290 SQMALKRINRELQDLGRDPP-----AQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLT 454
S + R+ E + RD P C + G DL +W+ I G + ++GG++ LT
Sbjct: 2 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 61
Query: 455 IHFPTDYPFKPPKVAFTTRIYHPNIXSNGSICLDXLRAQ--WSPALTISKVLLSICSLLC 628
+ FP +YP +PPK FT ++HPN+ +G++CL L + W PA+TI ++LL I LL
Sbjct: 62 MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLD 121
Query: 629 D 631
D
Sbjct: 122 D 122
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 90.2 bits (214), Expect = 2e-19
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +2
Query: 311 INRELQDLGRDPPAQCSAG-PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKP 487
+ ++L+++ ++PP S G + +F W+ I+GP D+ Y+GG F T+ FP DYP P
Sbjct: 10 LRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMP 69
Query: 488 PKVAFTTRIYHPNIXSNGSICLDXL 562
PK+ FTT I+HPN+ NG +C+ L
Sbjct: 70 PKMKFTTEIWHPNVHPNGEVCISIL 94
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 75.4 bits (177), Expect = 6e-15
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Frame = +2
Query: 290 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 469
S+ A KR+ +E L ++P A P E++ W I GP D+PY+GG + T+ FP
Sbjct: 3 SKGAYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPP 62
Query: 470 DYPFKPPKVAFTTRIYHPNIXSNGSICL---DXLRAQWSPALTISKVLLSICSLL 625
DYPFKPP + T +N +CL D W+P+ +S +L+ + S +
Sbjct: 63 DYPFKPPAIRMITP--SGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFM 115
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 71.3 bits (167), Expect = 1e-13
Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = +2
Query: 410 GPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIXS-NGSICLDXLRAQWSP 580
GP ++PY GG++ + + P++YP+K P + F RI+HPNI +GS+CLD + WSP
Sbjct: 38 GPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSP 95
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 68.1 bits (159), Expect = 1e-12
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = +2
Query: 413 PVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIXSNGSICLDXLRAQWSPALTI 592
P + Y+GG F I +YP PPKV +IYHPNI G++CL+ LR W+P L +
Sbjct: 60 PDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNL 119
Query: 593 SKVLLSI 613
+ +L+ +
Sbjct: 120 NSILVGL 126
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 50.4 bits (115), Expect = 2e-07
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Frame = +2
Query: 350 AQCSAGPHGED---LFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 520
+ CS G D L W ATI+GP S ++ ++ L IH +YP PP V F +RI
Sbjct: 24 SSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINL 83
Query: 521 PNI-XSNGSI---CLDXLRAQWSPALTISKVLLSI 613
P + G + +D LR W ++ VLL +
Sbjct: 84 PGVDGETGKVNPHKIDCLR-HWKREYSMETVLLDL 117
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +2
Query: 287 NSQMALKRINRELQDLGRDPPAQCSAG---PHGEDLFHWQATIMGPVDSPYQGGVF 445
+S A K I+ + Q+ + A AG P G + W AT M P+ +P GG F
Sbjct: 246 SSSAAAKNISEDAQNRMTNATASIMAGSALPSGGKKYSWMATDMTPM-TPAVGGGF 300
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +3
Query: 351 HNVRQAHTVKIC---SIGKPQLWAQLTVLIKEEFSSLPYISLQTTLSNHQ 491
H V +T C ++ P LWA L + F Y L+T N+Q
Sbjct: 406 HTVFSGYTTVWCPQNAVFVPGLWANLATRYRASFMLTDYAGLKTIAYNYQ 455
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 467 TDYPFKPPKVAFTTRIYHPNIXSN 538
TD FKP + T +++P+I +N
Sbjct: 113 TDKKFKPNDTSITANVFNPSIQNN 136
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +2
Query: 365 GPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIY 517
G HG LF M P PY+G T H + ++ + TT Y
Sbjct: 146 GYHGNTLFALSVGGMKPRKQPYEGVFSHTTSHVSPCFEYRYKENGETTEEY 196
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 175 DFGGTFAFRQGAILQSLIXGPWL 243
D G+ +FR+G ++++L G W+
Sbjct: 943 DDNGSLSFREGVLVEALRNGYWI 965
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 374 RVGLPNIVLVDPCPDL 327
RV L +IV ++PCPD+
Sbjct: 113 RVRLGDIVTINPCPDI 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,304
Number of Sequences: 5004
Number of extensions: 55313
Number of successful extensions: 139
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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