Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26b06
(632 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 231 4e-61
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 231 4e-61
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 110 7e-25
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 110 7e-25
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 107 7e-24
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 101 4e-22
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 96 2e-20
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 95 3e-20
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 90 1e-18
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 88 6e-18
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 87 1e-17
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 82 4e-16
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 76 2e-14
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 73 2e-13
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 72 4e-13
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 72 4e-13
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 66 1e-11
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 64 6e-11
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 63 1e-10
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 62 2e-10
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 60 1e-09
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 60 1e-09
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 55 5e-08
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 53 2e-07
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical pr... 42 3e-04
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 42 3e-04
Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical pr... 31 0.69
AF016665-9|AAC71177.1| 363|Caenorhabditis elegans Nuclear hormo... 29 2.1
Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical p... 29 2.8
U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein. 29 2.8
AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical ... 29 2.8
AF100307-11|AAC68929.1| 304|Caenorhabditis elegans Hypothetical... 29 2.8
Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical pr... 28 4.8
AL032639-9|CAA21633.1| 303|Caenorhabditis elegans Hypothetical ... 28 4.8
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 28 6.4
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 231 bits (564), Expect = 4e-61
Identities = 103/112 (91%), Positives = 107/112 (95%)
Frame = +2
Query: 296 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 475
MALKRI +ELQDLGRDPPAQCSAGP G+DLFHWQATIMGP +SPYQGGVFFLTIHFPTDY
Sbjct: 1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 476 PFKPPKVAFTTRIYHPNIXSNGSICLDXLRAQWSPALTISKVLLSICSLLCD 631
PFKPPKVAFTTRIYHPNI SNGSICLD LR+QWSPALTISKVLLSICSLLCD
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 112
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 231 bits (564), Expect = 4e-61
Identities = 103/112 (91%), Positives = 107/112 (95%)
Frame = +2
Query: 296 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 475
MALKRI +ELQDLGRDPPAQCSAGP G+DLFHWQATIMGP +SPYQGGVFFLTIHFPTDY
Sbjct: 1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 476 PFKPPKVAFTTRIYHPNIXSNGSICLDXLRAQWSPALTISKVLLSICSLLCD 631
PFKPPKVAFTTRIYHPNI SNGSICLD LR+QWSPALTISKVLLSICSLLCD
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 112
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 110 bits (265), Expect = 7e-25
Identities = 45/107 (42%), Positives = 72/107 (67%)
Frame = +2
Query: 305 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 484
+R+ R+ + L DPPA S P +++ W+A I GP ++P++ G F L++ F +YP K
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 485 PPKVAFTTRIYHPNIXSNGSICLDXLRAQWSPALTISKVLLSICSLL 625
PP V F ++++HPN+ ++GSICLD L+ +WSP ++ +L SI SLL
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLL 113
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 110 bits (265), Expect = 7e-25
Identities = 45/107 (42%), Positives = 72/107 (67%)
Frame = +2
Query: 305 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 484
+R+ R+ + L DPPA S P +++ W+A I GP ++P++ G F L++ F +YP K
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 485 PPKVAFTTRIYHPNIXSNGSICLDXLRAQWSPALTISKVLLSICSLL 625
PP V F ++++HPN+ ++GSICLD L+ +WSP ++ +L SI SLL
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLL 113
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 107 bits (257), Expect = 7e-24
Identities = 54/107 (50%), Positives = 66/107 (61%)
Frame = +2
Query: 305 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFK 484
+RI +E Q L DP SA P + ++ I GP DSP+ GGVF L + P +YP
Sbjct: 7 RRIIKETQRLLADPVPGISANPDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMA 66
Query: 485 PPKVAFTTRIYHPNIXSNGSICLDXLRAQWSPALTISKVLLSICSLL 625
PKV F T+IYHPNI G ICLD L+ +WSPAL I VLLSI +LL
Sbjct: 67 APKVRFMTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALL 113
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 101 bits (242), Expect = 4e-22
Identities = 43/54 (79%), Positives = 48/54 (88%)
Frame = +2
Query: 296 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTI 457
MALKRI +EL DLGRDPPAQCS G G+DL+HWQATIMGP +SPYQGG+FFLTI
Sbjct: 1 MALKRIQKELHDLGRDPPAQCSTGSVGDDLYHWQATIMGPPESPYQGGIFFLTI 54
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 95.9 bits (228), Expect = 2e-20
Identities = 44/85 (51%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +2
Query: 377 EDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIXS-NGSICL 553
E+L + I GP D+PY GG+F L I P YPF PP V F+T+I+HPN+ S G ICL
Sbjct: 34 ENLTEIKGHIRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICL 93
Query: 554 DXLRAQWSPALTISKVLLSICSLLC 628
D L+ QW+ +LT+ VLLSI +L+C
Sbjct: 94 DILKDQWAASLTLRTVLLSIQALMC 118
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 95.5 bits (227), Expect = 3e-20
Identities = 50/125 (40%), Positives = 69/125 (55%), Gaps = 14/125 (11%)
Frame = +2
Query: 299 ALKRINRELQDLGRDPPAQCSAGPHGED-LFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 475
ALKR+ E ++L PP A P ED F W+ I GP ++ + GVF I FP DY
Sbjct: 5 ALKRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDY 64
Query: 476 PFKPPKVAFTTRIYHPNIXSNGSICLDXLRA-------------QWSPALTISKVLLSIC 616
P PPK+ FT I+HPNI ++G +C+ L A +WSP +I K+LLS+
Sbjct: 65 PLSPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKILLSVV 124
Query: 617 SLLCD 631
S+L +
Sbjct: 125 SMLAE 129
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 89.8 bits (213), Expect = 1e-18
Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 13/125 (10%)
Frame = +2
Query: 290 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 469
S AL+ + EL++L P + + ++LF W I GP + YQGG F +I FP+
Sbjct: 8 SSGALRALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKASIRFPS 67
Query: 470 DYPFKPPKVAFTTRIYHPNIXSNGSICLDXLRA-------------QWSPALTISKVLLS 610
+YP+ PP + FTT+++HPN+ NG +C+ L + +W+P ++ +LLS
Sbjct: 68 NYPYSPPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTILLS 127
Query: 611 ICSLL 625
+ SLL
Sbjct: 128 VISLL 132
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 87.8 bits (208), Expect = 6e-18
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 14/121 (11%)
Frame = +2
Query: 311 INRELQDLGRDPPAQCSAG-PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKP 487
+ ++L D+ R P SAG D++ W+ ++GP D+ Y+GG F + FP DYP KP
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 488 PKVAFTTRIYHPNIXSNGSICLDXL-------------RAQWSPALTISKVLLSICSLLC 628
PK+ F + I+HPNI G++C+ L +W P T+ +LLS+ S+L
Sbjct: 68 PKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLT 127
Query: 629 D 631
D
Sbjct: 128 D 128
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 86.6 bits (205), Expect = 1e-17
Identities = 44/111 (39%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Frame = +2
Query: 299 ALKRINRELQDLGR-DPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDY 475
A +R+ +EL DL A + +L W ++ P PY G F + I FP DY
Sbjct: 3 ATRRLQKELGDLKNCGVKAYENVECEETNLLKWTVLLI-PDKEPYNKGAFKVGITFPVDY 61
Query: 476 PFKPPKVAFTTRIYHPNIXSNGSICLDXLRAQ-WSPALTISKVLLSICSLL 625
PFKPPKVAF T+IYHPN+ G CL + A+ W PA +V++++ SL+
Sbjct: 62 PFKPPKVAFETKIYHPNVDEEGKFCLPIVTAENWKPATKTEQVMMALLSLI 112
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 81.8 bits (193), Expect = 4e-16
Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 20/133 (15%)
Frame = +2
Query: 290 SQMALKRINRELQDLGRDPPAQCSAGPHGE----DLFHWQATIMGPVDSPYQGGVFFLTI 457
S +AL R+ R+ +++ AG H E +L + I GP +PY GG F + +
Sbjct: 16 SNLALARVTRKCKEVANASDIT-EAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIKV 74
Query: 458 HFPTDYPFKPPKVA---------------FTTRIYHPNIXSN-GSICLDXLRAQWSPALT 589
P YPF+PPKV F TRI+HPNI S G+ICLD L+ +W+ +LT
Sbjct: 75 DIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLT 134
Query: 590 ISKVLLSICSLLC 628
+ VLLS+ ++LC
Sbjct: 135 LRTVLLSLQAMLC 147
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 76.2 bits (179), Expect = 2e-14
Identities = 44/116 (37%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Frame = +2
Query: 290 SQMALKRINRELQDLGRDPPAQCSAG--PHGEDLFHWQATIMGPVDSPYQGGVFFLTIHF 463
S A +R+ +EL L + P DL W+ ++G + Y G VF L F
Sbjct: 2 SDAATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTF 61
Query: 464 PTDYPFKPPKVAFT--TRIYHPNIXSNGSICLDXLRAQWSPALTISKVLLSICSLL 625
YPF P+V F T HP+I SNG ICL L W+PAL++ V LSI S+L
Sbjct: 62 GPQYPFNSPEVMFVGETIPAHPHIYSNGHICLSILSDDWTPALSVQSVCLSILSML 117
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Frame = +2
Query: 290 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 469
S +AL+R+ ++ Q L ++P A P ++ W+ I+G +PY+GG++ + FP
Sbjct: 6 STVALQRLKKDYQRLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGKLLFPK 65
Query: 470 DYPFKPPKVAFTTRIYHPNIXSNGSICL---DXLRAQWSPALTISKVLLSICSLLCD 631
D+PFKPP + T + +N +CL D W+PA T+S ++ + S + D
Sbjct: 66 DFPFKPPAILMLTP--NGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMND 120
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 71.7 bits (168), Expect = 4e-13
Identities = 29/84 (34%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Frame = +2
Query: 380 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIXSNGSICLDX 559
+LF+W+ I G D+ ++GG++ + + F D+P PPK F ++HPN+ +G++CL
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSL 96
Query: 560 L--RAQWSPALTISKVLLSICSLL 625
L W P+++I ++L+ I LL
Sbjct: 97 LDENKDWKPSISIKQLLIGIQDLL 120
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 71.7 bits (168), Expect = 4e-13
Identities = 29/84 (34%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Frame = +2
Query: 380 DLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIXSNGSICLDX 559
+LF+W+ I G D+ ++GG++ + + F D+P PPK F ++HPN+ +G++CL
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSL 96
Query: 560 L--RAQWSPALTISKVLLSICSLL 625
L W P+++I ++L+ I LL
Sbjct: 97 LDENKDWKPSISIKQLLIGIQDLL 120
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 66.5 bits (155), Expect = 1e-11
Identities = 34/77 (44%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = +2
Query: 395 QATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIXS-NGSICL-DXLRA 568
Q I G ++PY+GG+F L I YPFK P V F T+I+HP++ +G+ICL D
Sbjct: 382 QGIIKGVEETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNG 441
Query: 569 QWSPALTISKVLLSICS 619
W ++TI KVL+ I S
Sbjct: 442 VWPVSMTIYKVLIVIQS 458
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 64.5 bits (150), Expect = 6e-11
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 12/82 (14%)
Frame = +2
Query: 404 IMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR-----IYHPNIXSNGSICLDXL-- 562
I GP D+PY G+F I FPT YPF PPK AF T ++PN+ ++G ICL L
Sbjct: 449 ISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGT 508
Query: 563 -----RAQWSPALTISKVLLSI 613
+W+P ++ +VL+SI
Sbjct: 509 WEGRPEEKWNPYCSLMQVLVSI 530
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 63.3 bits (147), Expect = 1e-10
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +2
Query: 410 GPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-XSNGSICLDXLRAQWSPAL 586
GP D+ Y+ GV+ + + P YPFK P + F +I+HPNI ++G++CLD + W+
Sbjct: 41 GPKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQAWTALY 100
Query: 587 TISKV 601
++ +
Sbjct: 101 DLTNI 105
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 62.5 bits (145), Expect = 2e-10
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Frame = +2
Query: 260 VESQYNST*NSQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGG 439
+ QYN+ ++R+ +E +L R P A P ++LF W TI G + + ++GG
Sbjct: 1 MSEQYNT---KNAGVRRLMKEAMEL-RQPTEMYHAQPMEDNLFEWHFTIRGTLGTDFEGG 56
Query: 440 VFFLTIHFPTDYPFKPPKVAFTTRIYHPNIXSNGSICLDXL---RAQWSPALTISKVLLS 610
++ I FP DYP KPP + T + N +CL W P+ +I LL+
Sbjct: 57 IYHGRIIFPADYPMKPPNLILLTP--NGRFELNKKVCLSISGYHPETWLPSWSIRTALLA 114
Query: 611 ICSLL 625
+ L
Sbjct: 115 LIGFL 119
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = +2
Query: 374 GEDLF-HWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIXSNGSIC 550
G D++ W T+ GP SP++GG + ++++F +P PP F T ++HPN+ GSI
Sbjct: 64 GADIWCSWICTVPGPRGSPWEGGEYEVSVNFHK-WPIIPPICEFKTPLHHPNVDLRGSIY 122
Query: 551 LDXLRAQ-WSPALTISKVLLSICSLL 625
L L + WS ++ K+L I +LL
Sbjct: 123 LKMLEQEHWSSETSLKKLLREISNLL 148
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Frame = +2
Query: 290 SQMALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPT 469
S A++R+ ++ L +DP A P+ +++ W + G D+P+ GG ++ + F
Sbjct: 17 SSSAVRRLQKDYAKLMQDPVDGIKALPNEDNILEWHYCLRGSPDTPFYGGYYWGKVIFKE 76
Query: 470 DYPFKPPKVAFTTRIYHPNIXSNGSICL---DXLRAQWSPALTISKVLLSICSLL 625
++P+ PP + T + +N +CL D W+P T+S +L+ + S +
Sbjct: 77 NFPWSPPAITMITP--NGRFQTNTRLCLSISDYHPESWNPGWTVSAILIGLHSFM 129
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 54.8 bits (126), Expect = 5e-08
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Frame = +2
Query: 413 PVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIXSNGSICLDXLRAQ------W 574
P + Y+GG F I P +Y PP V T+++HPNI +GSICL LR W
Sbjct: 67 PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGW 126
Query: 575 SPALTISKVLLSICSLLCD 631
P ++ V+ + SL D
Sbjct: 127 RPTRNLTDVVHGLVSLFND 145
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 52.8 bits (121), Expect = 2e-07
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Frame = +2
Query: 302 LKRINRELQDLGRDPPAQCSAGPHGE---DLFHWQATIMGPVDSPYQGGVFFLTIHFPTD 472
L RI +E+ DL ++ E D+F ++ G + Y+ +F LT+ +
Sbjct: 15 LSRIRKEIADLAKNKRRFIKDFRKIEKCKDIFQFKIIGDGVL---YKNMIFTLTLDVNVE 71
Query: 473 YPFKPPKVAFTTRIYHPNIXS-NGSICLD-XLRAQWSPALTISKVLLSICSLL 625
YPFKPP + F +YHPN+ +C L+ W P T+ VLL++ LL
Sbjct: 72 YPFKPPYLKFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMEDVLLNLIVLL 124
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Frame = +2
Query: 383 LFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI-XSNGSI---C 550
L W A+I+GP +PY+ ++ L I +YP +PP V FTT+++ + SNG I
Sbjct: 38 LTRWTASIIGPPRTPYESRIYNLQIQCGGNYPREPPTVRFTTKVHMVGVNQSNGVIDKRN 97
Query: 551 LDXLRAQWSPALTISKVLLSI 613
L LR WS + I VL I
Sbjct: 98 LTTLR-NWSNSYMIKTVLEDI 117
>Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical
protein F26H9.7 protein.
Length = 219
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/65 (41%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 383 LFHWQATIMGPVDSPYQGGVFFLTIHF-PTDYPFKPPKVAFTTRIYHPNIXSNGSICLDX 559
LFH I GPV S Y+GG FF I+ P P+V F T I+HPN+ G+ D
Sbjct: 63 LFH--VIIDGPVGSIYEGGTFFADINIQPYQNHSLIPRVCFHTFIFHPNLGKYGN--WDM 118
Query: 560 LRAQW 574
QW
Sbjct: 119 RGIQW 123
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 404 IMGPVDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH 520
I GP D+PY+ GVF + + FP +YP P++ F T I++
Sbjct: 35 IAGPADTPYETGVFEVDLTFPDNYPNALPQIKFQTLIWN 73
>Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical
protein Y69H2.6 protein.
Length = 292
Score = 31.1 bits (67), Expect = 0.69
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Frame = +2
Query: 320 ELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSPYQGGVFFLTIHFPTDYPFKP--PK 493
E ++ R P P + F W I + GG+F IH P ++P P+
Sbjct: 27 EFVEVCRAPIDGIFVSPSANNKFLWFGVIFVR-KGIFGGGIFRFNIHIPLEFPDASDLPR 85
Query: 494 VAF-TTRIYHPNIXSNG-SICLD 556
V F + ++HP I + +CL+
Sbjct: 86 VIFEQSNLFHPLICTKSKELCLN 108
>AF016665-9|AAC71177.1| 363|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 166 protein.
Length = 363
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +2
Query: 446 FLTIHFPTDYPFKPPKVAFTTRIYHPNIXSNGSICLDXLRAQWSPALTISKVLLSIC 616
F I+ P P + ++ +I + ++ + D LR QW P ++ KVL+ C
Sbjct: 300 FCLINNPRSAPSRLLEIISINQILNRQFHASYKL-FDALRKQWDPTMSFQKVLVESC 355
>Z82059-12|CAB04880.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 111 IILTYNTKEIIIGTKHELIEIKHFSANGEQQTGKSTI 1
+ +T++ +EI++ TK EL + + G +GKSTI
Sbjct: 87 LTITFHGREIVVDTKLELNRGRRYGLIGLNGSGKSTI 123
>U20783-1|AAC46845.1| 535|Caenorhabditis elegans unknown protein.
Length = 535
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 111 IILTYNTKEIIIGTKHELIEIKHFSANGEQQTGKSTI 1
+ +T++ +EI++ TK EL + + G +GKSTI
Sbjct: 86 LTITFHGREIVVDTKLELNRGRRYGLIGLNGSGKSTI 122
>AL032665-2|CAA21772.1| 622|Caenorhabditis elegans Hypothetical
protein T27E9.7 protein.
Length = 622
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 111 IILTYNTKEIIIGTKHELIEIKHFSANGEQQTGKSTI 1
+ +T++ +EI++ TK EL + + G +GKSTI
Sbjct: 87 LTITFHGREIVVDTKLELNRGRRYGLIGLNGSGKSTI 123
>AF100307-11|AAC68929.1| 304|Caenorhabditis elegans Hypothetical
protein T12B5.3 protein.
Length = 304
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 484 FERVVCREMYGKEENSSLIRTVNWA--HNCGLPMEQIF 377
FER+ C E + +N+ T W HNC +P+EQ+F
Sbjct: 185 FERLACLEQW---KNAKTFETP-WVLVHNCQIPIEQLF 218
>Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical
protein C17D12.5 protein.
Length = 139
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +2
Query: 443 FFLTIHFPTDYPFKPPKVAFTTRIYHPNIXSNGSICLDXLRAQWSPALTISKVLLSICSL 622
+ +T+ P +PF PP + T L QW P+ I VL+ CS+
Sbjct: 51 YIVTVAIPPKFPFSPPAITCKT--------DKNMKFLFLEENQWKPSTGIVAVLIEACSV 102
Query: 623 L 625
+
Sbjct: 103 I 103
>AL032639-9|CAA21633.1| 303|Caenorhabditis elegans Hypothetical
protein Y38F1A.8 protein.
Length = 303
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 290 YFMLSYTDFQLDNETVSQGPXIRDCKMAPCLNAKVPPKSFYVVIVKSQQ 144
YF+++YT + E VS +CK P +N +PP S+ + I + Q+
Sbjct: 59 YFVVAYT-YLFQFEKVSN---FTECKECPNMNITLPPVSYSIGIWQPQK 103
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 435 EEFSSLPYISLQTTLSNHQKLHSQHVFIILT*XVMVPSVLTFCVHSGHQRSPYPKCCSQS 614
EE++ + + T Q Q+V +++T +M PS++T + G Q + P+
Sbjct: 1202 EEYTPMNFAPPPTFTYPQQMPMMQYVPVMMTSSMMTPSMMTPSMMPGQQIAMVPQQMMMQ 1261
Query: 615 AHF 623
HF
Sbjct: 1262 PHF 1264
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,095,042
Number of Sequences: 27780
Number of extensions: 328491
Number of successful extensions: 859
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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