Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26a24
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 148 6e-37
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 103 2e-23
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 97 1e-21
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 93 2e-20
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 87 2e-18
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 85 6e-18
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 70 2e-13
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 66 2e-12
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 63 3e-11
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 62 4e-11
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 61 1e-10
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 60 3e-10
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 54 1e-08
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 27 1.4
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 27 1.8
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 5.6
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 7.3
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.7
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz... 25 9.7
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 25 9.7
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 148 bits (358), Expect = 6e-37
Identities = 68/117 (58%), Positives = 81/117 (69%)
Frame = +3
Query: 198 ALPRRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDY 377
ALP+RIIKE + L ++P PGI A P+E N RYF + + GP+ S +Y
Sbjct: 2 ALPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEY 61
Query: 378 PMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALXIRTVLLSIQALLSAPNPDD 548
PM P VRF+TKIYHPN+D+LGRICL LK WSPAL IRTVLLSIQAL+ APNPDD
Sbjct: 62 PMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDD 118
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 103 bits (246), Expect = 2e-23
Identities = 52/114 (45%), Positives = 66/114 (57%)
Frame = +3
Query: 207 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 386
+RI +E L ++P SA P + ++ + GP DS DYP
Sbjct: 4 KRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 387 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALXIRTVLLSIQALLSAPNPDD 548
PKV F T+IYHPNI+ G ICLDIL+D+WSPAL I VLLSI +LL+ PNPDD
Sbjct: 64 PPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDD 117
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 97.5 bits (232), Expect = 1e-21
Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Frame = +3
Query: 198 ALPRRIIKETQRLMQEPVPGISAVP-SETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXD 374
++ +R+ E LM PGISA P S++N ++ +TGP D+ +
Sbjct: 28 SVTKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPAN 87
Query: 375 YPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALXIRTVLLSIQALLSAPN 539
YP S P + F + ++HPN+D G ICLDILKDKWS ++T+LLS+Q+LL PN
Sbjct: 88 YPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPN 142
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 93.1 bits (221), Expect = 2e-20
Identities = 38/111 (34%), Positives = 65/111 (58%)
Frame = +3
Query: 207 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 386
RR++++ +R+ Q+P G+SA P N ++ ++ GP D+ YP
Sbjct: 7 RRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNK 66
Query: 387 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALXIRTVLLSIQALLSAPN 539
P V+F++ ++HPN+ G +CLDIL+++WSP + +L SIQ+LL+ PN
Sbjct: 67 PPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPN 117
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 86.6 bits (205), Expect = 2e-18
Identities = 43/115 (37%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Frame = +3
Query: 207 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 386
RRI KE + Q+ GI + + + GPE + DYP
Sbjct: 7 RRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFR 66
Query: 387 APKVRFITKIYHPNID-RLGRICLDILKDKWSPALXIRTVLLSIQALLSAPNPDD 548
PK+ F TKIYHPN+ + G ICLDILKD+WSP +++ L+S+Q+LL P P +
Sbjct: 67 PPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSN 121
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 85.0 bits (201), Expect = 6e-18
Identities = 43/115 (37%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Frame = +3
Query: 207 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 386
RR+ KE L + P+P I + N ++ GP DS DYP
Sbjct: 10 RRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQ 69
Query: 387 APKVRFITKIYHPNIDRLGRICLDILKDK-WSPALXIRTVLLSIQALLSAPNPDD 548
P + F T+IYHPN D G +CL ILK + + P++ +R+VL I LL PNPDD
Sbjct: 70 PPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDD 124
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 70.1 bits (164), Expect = 2e-13
Identities = 27/59 (45%), Positives = 41/59 (69%)
Frame = +3
Query: 372 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALXIRTVLLSIQALLSAPNPDD 548
+YP PKV+ + KIYHPNID G +CL+IL+ W+P L + ++L+ +Q L +PN +D
Sbjct: 79 NYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAED 137
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 66.5 bits (155), Expect = 2e-12
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Frame = +3
Query: 207 RRIIKETQRLMQEPVPGISAVPSETNARYFH--VIVTGPEDSXXXXXXXXXXXXXXXDYP 380
+R+ KE + G+ + T+ FH ++ GP ++ YP
Sbjct: 6 KRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYP 65
Query: 381 MSAPKVRFITKIYHPNIDRL-GRICLDILKDKWSPALXIRTVLLSIQALLS 530
+S P V F TKI HPNI G +C+DILK WSPA +++ L+I +LLS
Sbjct: 66 ISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLS 116
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 62.9 bits (146), Expect = 3e-11
Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 14/127 (11%)
Frame = +3
Query: 207 RRIIKETQRLMQEPVPGISAVPSETNARY-FHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 383
RR++KE + L + GI+A PS + + + ++ GP+ + DYP+
Sbjct: 8 RRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPL 67
Query: 384 SAPKVRFITKIYHPNIDRLGRICLDIL-------------KDKWSPALXIRTVLLSIQAL 524
P ++F + +HPN+ + G +C+ IL ++WSP + +LLS+ ++
Sbjct: 68 GPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSM 127
Query: 525 LSAPNPD 545
L+ PN +
Sbjct: 128 LAEPNDE 134
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 62.5 bits (145), Expect = 4e-11
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 14/123 (11%)
Frame = +3
Query: 219 KETQRLMQEPVPGISA-VPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPK 395
K+ + + + P G S + + + + V++ GPED+ DYP+ PK
Sbjct: 12 KQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPK 71
Query: 396 VRFITKIYHPNIDRLGRICLDILK-------------DKWSPALXIRTVLLSIQALLSAP 536
++F T+I+HPN+ G +C+ IL ++W P T+L+S+ ++LS+P
Sbjct: 72 MKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSP 131
Query: 537 NPD 545
N +
Sbjct: 132 NDE 134
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 60.9 bits (141), Expect = 1e-10
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Frame = +3
Query: 192 MAALPRRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXX 371
M++ RRI + +L+ ++ V N + F+V GP ++
Sbjct: 1 MSSPRRRIETDVMKLLMSDYE-VTLV--NDNMQEFYVRFHGPSETPYSGGIWKVHVELPS 57
Query: 372 DYPMSAPKVRFITKIYHPNIDRL-GRICLDILKDKWSPALXIRTVL-LSIQALLSAPNPD 545
+YP +P + F+ +I+HPNID L G +CLD++ WSP + + + + LL PN
Sbjct: 58 EYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNAS 117
Query: 546 D 548
D
Sbjct: 118 D 118
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 59.7 bits (138), Expect = 3e-10
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +3
Query: 372 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALXIRTVLLSIQALLSAPN 539
+YP PK RF ++HPN+ G +CL IL ++ W PA+ I+ +LL IQ LL PN
Sbjct: 67 EYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPN 124
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 54.0 bits (124), Expect = 1e-08
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Frame = +3
Query: 207 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 386
+R++KE L + PV + A P+ N +H I+TGP D+ DYP
Sbjct: 8 KRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFK 67
Query: 387 APKVRFITKIYHPNIDRLGRICL---DILKDKWSPALXIRTVLLSIQALLSA 533
P +R IT R+CL D W+P+ + T+L+ + + +++
Sbjct: 68 PPAIRMITP--SGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTS 117
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 27.5 bits (58), Expect = 1.4
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = +3
Query: 294 FHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNID-RLGRI---CLDI 461
++ + GP S +YP + P V F+++I P +D G++ +D
Sbjct: 41 WNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVNPHKIDC 100
Query: 462 LKDKWSPALXIRTVLLSIQ 518
L+ W + TVLL ++
Sbjct: 101 LR-HWKREYSMETVLLDLK 118
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 399 RFITKIYHPNIDRLGRICLDILKDKW 476
+FI ++HP+ RL R+C + + W
Sbjct: 219 KFILSVFHPDAARLYRLCSSLKRICW 244
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 25.4 bits (53), Expect = 5.6
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +3
Query: 384 SAPKVRFITKIYHPNIDRLGRICLDI 461
++P V +TK+ HP +G + + I
Sbjct: 393 NSPSVSLLTKVLHPKYHLIGNVAVQI 418
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 447 ICLDILKDKWSPALXIRTVLLSIQALLSAPNPDD 548
+CL K KW + + + IQALL + NPD+
Sbjct: 111 LCL-YRKSKWKKQI-VGEAYIGIQALLLSTNPDE 142
>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 140 NCIKYLIILALNVLTTLVEAR 78
NCIK L+++ +++ LVE+R
Sbjct: 333 NCIKPLVLIIGDIINLLVESR 353
>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 669
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 225 TQRLMQEPVPGISAVPSETNARYFHVIVTGPED 323
T +++EP+P +S+VPS N R V+ G ++
Sbjct: 249 TASVLKEPIPILSSVPS-MNRRMKEVLEEGSKN 280
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 64 INIRKRASTSVVNTFSANIIRYFIQ--LYE*SLPFDKLRSTAYLK 192
++I+ +V+TF AN RY++Q L + ++ D L++ LK
Sbjct: 318 LDIKSPFEQGIVDTFKANYRRYWLQYSLNQINILRDPLKAVNVLK 362
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,042,251
Number of Sequences: 5004
Number of extensions: 38423
Number of successful extensions: 90
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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