Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26a12
         (226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    35   0.002
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    31   0.027
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   1.8  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    24   3.1  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    23   4.1  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    23   4.1  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    23   4.1  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    23   5.4  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    23   5.4  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    22   9.5  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    22   9.5  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    22   9.5  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    22   9.5  

>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 34.7 bits (76), Expect = 0.002
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 1   DTLPGSENVMLVTGLSGHGFKFTSVLGE 84
           D  P  EN+ + TG SGHGFKF  +LG+
Sbjct: 342 DYHPDYENLFVCTGGSGHGFKFFPILGK 369


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 30.7 bits (66), Expect = 0.027
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 1   DTLPGSENVMLVTGLSGHGFKFTSVLGE-IAAFFAGD 108
           D +P  +NV +  G SGH FKF   +G  IA    GD
Sbjct: 357 DKVPQFDNVFVANGDSGHAFKFLPNIGRYIAQRILGD 393


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 204 SYYYHSLNHAKQNLHMIKSIQRKRSDIKTRFFVPSKERSDF 82
           S+ Y  +N+   NLH+I+ +Q+ +   +        E S+F
Sbjct: 502 SFLYFLINNFNDNLHIIELLQKDKRKFEPIIAWSETEFSEF 542


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 104 PAKNAAISPSTLVNLKPWP-LRPVT 33
           P K+  +SPS++  L P P +RP +
Sbjct: 215 PPKHLTVSPSSIQRLSPQPYVRPTS 239


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 156 IKSIQRKRSDIKTRFFVPSKERSDFAEHTCK 64
           ++ +  K+S I+T   VP++E +      CK
Sbjct: 103 LEKVDTKKSKIQTLILVPTRELALQTSQVCK 133


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 107 SPAKNAAISPSTLVNLKPWPLRPVTSIT 24
           SP K    SPS   N+   PL  +T+ T
Sbjct: 693 SPVKTIPSSPSPTTNIFSAPLNNITNCT 720


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 119 PGFLSPAKNAAISPSTLVNLKPWPLRPVTS 30
           P  LS  +N   S   L++   WPL+P +S
Sbjct: 156 PSVLSHKRNK--SSKELIDAMQWPLKPTSS 183


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 75  HTCKFKTVAAQTGH*HNVLRTRQG 4
           HT     V   +G  HN+LRT++G
Sbjct: 276 HTKASDIVQIASGTEHNILRTKKG 299


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 92  AAISPSTLVNLKPWPLRP 39
           ++I P+ LV LKP+PL+P
Sbjct: 660 SSIKPTLLV-LKPFPLKP 676


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 1   DTLPGSENVMLVTGLSGHGFKFTSVLG 81
           DTL GSE   +   LSG G +   +LG
Sbjct: 104 DTLSGSEGPSIGIALSGGGLR-AMILG 129


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 1   DTLPGSENVMLVTGLSGH 54
           D +PG EN+ +   +SGH
Sbjct: 658 DCIPGIENIDVTNLVSGH 675


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -2

Query: 174 KQNLHMIKSIQRKRSDIKT 118
           K+   + KS+++KRSD+++
Sbjct: 313 KEEQELYKSLEKKRSDLES 331


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 90  CVLCWGQKTGF 122
           CV+CWG+  G+
Sbjct: 340 CVVCWGRTGGW 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 929,104
Number of Sequences: 5004
Number of extensions: 15789
Number of successful extensions: 37
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)