Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26a12
(226 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0044 - 11927272-11928516 33 0.041
09_04_0617 - 18981258-18981949,18983869-18984427 31 0.095
09_02_0163 - 5133805-5134252,5134353-5134460,5135693-5136012 29 0.51
12_02_0680 + 21903520-21904093,21904474-21905162 29 0.67
05_03_0635 - 16446805-16447716 28 1.2
04_04_1598 + 34698260-34698316,34698438-34699544 28 1.2
01_06_0986 - 33602714-33602741,33603037-33603146,33603401-336036... 27 1.5
01_06_1835 + 40223645-40224148,40224893-40225189,40225344-402254... 27 2.7
05_06_0136 + 25928152-25928659,25928767-25928899,25928987-259290... 25 6.2
09_04_0275 + 16302086-16303721,16304182-16304734,16305491-163055... 25 8.2
09_04_0096 - 14563288-14563614,14563717-14564048,14564137-14564356 25 8.2
03_01_0338 - 2667578-2668659,2668771-2668828 25 8.2
>01_03_0044 - 11927272-11928516
Length = 414
Score = 32.7 bits (71), Expect = 0.041
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Frame = +1
Query: 19 ENVMLVTGLSGHGFKFTSVLGEIAAFFAGD------KKPGFDIRPFALNRF 153
++V++ G SGHGFK +G I A A D + G ++R F ++RF
Sbjct: 357 DDVVVGAGFSGHGFKMGPAVGRILAEMAMDGEARTAAEAGVELRHFRISRF 407
>09_04_0617 - 18981258-18981949,18983869-18984427
Length = 416
Score = 31.5 bits (68), Expect = 0.095
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +1
Query: 19 ENVMLVTGLSGHGFKFTSVLGEIAAFFAGD------KKPGFDIRPFALNRF 153
++V++ G SGHGFK +G I A A D + G ++R F + RF
Sbjct: 351 KDVVVGAGFSGHGFKMGPAVGRILAEMALDGEARTAAEAGVELRHFRIGRF 401
>09_02_0163 - 5133805-5134252,5134353-5134460,5135693-5136012
Length = 291
Score = 29.1 bits (62), Expect = 0.51
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -2
Query: 198 YYHSLNHAKQNLHMIKSIQRKRSDIKTRFFVPSKERSDFAEHTCKF 61
YY N Q K++Q+ +D + V F +HTCKF
Sbjct: 145 YYRCTNQKGQGCMATKTVQQIENDNSSNSVVKLYNVDYFGKHTCKF 190
>12_02_0680 + 21903520-21904093,21904474-21905162
Length = 420
Score = 28.7 bits (61), Expect = 0.67
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 19 ENVMLVTGLSGHGFKFTSVLGEIAAFFAGD 108
++V++ G SGHGFK +G I A A D
Sbjct: 355 KDVVVGAGFSGHGFKMGPAVGRILAEMAMD 384
>05_03_0635 - 16446805-16447716
Length = 303
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 104 PAKNAAISPSTLVNLKPWPLRPVTSITFSEPG 9
PAK ++P T V + P P TS++ S PG
Sbjct: 181 PAKRLCVAPPTGVEHRAPPPDPPTSLSLSPPG 212
>04_04_1598 + 34698260-34698316,34698438-34699544
Length = 387
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 143 NANGLISKPGFLSPAKNAAISPSTLVNLKPWPLRPVTS 30
N + ++ +PGFLS ++ A PS +V P PV S
Sbjct: 21 NLSAVVKEPGFLSVSQKAK-KPSLVVRAVATPAAPVAS 57
>01_06_0986 -
33602714-33602741,33603037-33603146,33603401-33603601,
33604605-33604697,33604937-33605182,33606007-33606372,
33606459-33606599,33607170-33607526
Length = 513
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 119 PGFLSPAKNAAISPSTLVNLKPWPL 45
PG L A A + P L+ L PWP+
Sbjct: 28 PGLLEAALRAPVLPRDLLPLLPWPV 52
>01_06_1835 +
40223645-40224148,40224893-40225189,40225344-40225439,
40225595-40225748,40225773-40226011
Length = 429
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 92 AAISPSTLVNLKPWPLRPVTSITFSEPGRV 3
AA SPS L+NLKP+ R + + P RV
Sbjct: 35 AASSPSLLLNLKPFGARCAPAAAAAPPLRV 64
>05_06_0136 +
25928152-25928659,25928767-25928899,25928987-25929058,
25929150-25929221,25929507-25929670,25929760-25930025,
25930115-25930241,25930599-25930667,25930765-25930957,
25931053-25931299,25931342-25931470,25932367-25932654
Length = 755
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 143 NANGLISKPGFLSPAKNAAISPST 72
+ N L+ PG++ P A + PST
Sbjct: 521 STNTLVGTPGYVDPEYQATMQPST 544
>09_04_0275 +
16302086-16303721,16304182-16304734,16305491-16305519,
16305639-16305897,16305969-16306110
Length = 872
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 101 AKNAAISPSTLVNLKPW 51
A N+ SPS+LVN PW
Sbjct: 317 AGNSGPSPSSLVNTAPW 333
>09_04_0096 - 14563288-14563614,14563717-14564048,14564137-14564356
Length = 292
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 1 DTLPGSENVMLVTGLSGHGFKFTSVLGEIAAFFAGDK 111
D P S + +++ L GF+F GE+ A + K
Sbjct: 8 DRAPSSSSTAMISRLLPPGFRFRPTDGELVAHYLARK 44
>03_01_0338 - 2667578-2668659,2668771-2668828
Length = 379
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 6 PAWFGERYASDRSER 50
PAW GER+ S R+ R
Sbjct: 257 PAWLGERFFSGRAAR 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,656,704
Number of Sequences: 37544
Number of extensions: 92913
Number of successful extensions: 232
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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