Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26a12
         (226 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   3.2  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     20   3.2  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    19   5.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    19   5.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   9.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    19   9.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    19   9.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   9.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    19   9.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 186 LNHAKQNLHMIKSIQRKRSDIKTRFFVP-SKERS 88
           L+H  +N H+ +++   R+ +KT   V   K RS
Sbjct: 151 LHHDIENAHIRRTLHMNRTSLKTSKIVSYPKSRS 184


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 3.2
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -2

Query: 159  MIKSIQRKRSDIKTRFFVPSKERSDFAEHTC 67
            +++S  R R   +   F+   +R+D  E++C
Sbjct: 1316 VLQSSDRLRQLPEGSLFIKEVDRTDAGEYSC 1346


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 20.2 bits (40), Expect = 3.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 186 MNDNNKITFCQK 221
           M  NN+ TFC+K
Sbjct: 1   MKTNNQDTFCKK 12


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 183 NHAKQNLHMIKSIQRKRSDIKTRFFVPSKERS 88
           NH +    +IKS   K +    R F+ S++++
Sbjct: 57  NHIQNIFKIIKSTNEKITRYIIRMFLISQQKT 88


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 183 NHAKQNLHMIKSIQRKRSDIKTRFFVPSKERS 88
           NH +    +IKS   K +    R F+ S++++
Sbjct: 40  NHIQNIFKIIKSTNEKITRYIIRMFLISQQKT 71


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 76  LGEIAAFFAGDK 111
           LGE+A+ F G K
Sbjct: 414 LGELASSFVGPK 425


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 78  RRNRCVLCWGQK 113
           +RNRC  C  QK
Sbjct: 158 QRNRCQYCRYQK 169


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 103 GDKKPGFDIRP 135
           GD K  FDI P
Sbjct: 24  GDNKVAFDIPP 34



 Score = 18.6 bits (36), Expect = 9.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 74  TLVNLKPWPLRP 39
           +LV  + WP RP
Sbjct: 277 SLVASRTWPFRP 288


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 79  GEIAAFFAGDKKPGFDI 129
           G + A   G +KP +DI
Sbjct: 901 GPVTAGVIGARKPHYDI 917


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 78  RRNRCVLCWGQK 113
           +RNRC  C  QK
Sbjct: 158 QRNRCQYCRYQK 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,097
Number of Sequences: 438
Number of extensions: 1287
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3533460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)