Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26a07
         (274 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    31   0.029
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    27   0.63 
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    24   3.4  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    24   4.4  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    23   7.8  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    23   7.8  

>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 31.1 bits (67), Expect = 0.029
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +2

Query: 8   WQIVFLITVSFQFITNAVFVIFVKGSVQPWNF-HDEERIGTGVEELKSLNDHKNSIKEKE 184
           WQ +FLI     F+   V  + +  SV+  NF  DEE+    + +++  ND  ++I EK 
Sbjct: 219 WQYLFLIEGGVTFLCAIVIFLVLPVSVETANFLTDEEKT---LAKMRIENDSSSAISEKL 275

Query: 185 KLGNS*RVF 211
               S  VF
Sbjct: 276 SFKQSLTVF 284


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 0.63
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 17  VFLITVSFQFITNAVFVIFVKGSVQPWNFHDEERIGTGVEELKSLNDHKNSIKEK 181
           VFL   +  F+  A  +   K SV+      +E      +E KS ++HK   K+K
Sbjct: 32  VFLHIFTLTFLFKAFLLKMAKRSVEELKRSADEEASVKRKEKKSKHEHKKHKKDK 86



 Score = 24.2 bits (50), Expect = 3.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 131 VEELKSLNDHKNSIKEKEK 187
           VEELK   D + S+K KEK
Sbjct: 55  VEELKRSADEEASVKRKEK 73


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 74  VKGSVQPW-NFHDEERIGTGVEELKSLNDHKNSIKEKEKL 190
           VK   QP     DE++I +  ++L++++D K+ +   EKL
Sbjct: 510 VKQVAQPTAEVSDEKKIRSLCKKLRAIDDLKSRLNNNEKL 549


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 102 KFHGCTDPFTNITKTAL 52
           KF+G  D F N+ +TAL
Sbjct: 204 KFNGSLDAFRNVIRTAL 220


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 100 VPWLHRPFHEYHED 59
           VPW + P  E HED
Sbjct: 37  VPWYNIPLPELHED 50


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 130 TCTDSFFVVKVPWLHRP 80
           TC     +VK+ WL+ P
Sbjct: 68  TCVSCKLIVKIDWLNEP 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 959,981
Number of Sequences: 5004
Number of extensions: 14215
Number of successful extensions: 48
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)