Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26a07
         (274 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0067 - 673381-673387,675388-678131                               28   1.2  
02_02_0285 + 8582033-8582201,8582375-8582652,8582762-8583394           28   1.2  
11_04_0443 - 17808897-17809110,17809169-17813652                       25   6.3  
10_08_0264 - 16320307-16320483,16321181-16321519                       25   6.3  
05_01_0173 - 1199668-1199685,1199907-1199969,1200277-1200379,120...    25   6.3  
02_02_0322 - 8938101-8938149,8938235-8938458,8938545-8938605,893...    25   6.3  
11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171...    25   8.3  
07_01_0705 - 5313315-5315219,5315858-5315860                           25   8.3  
06_03_0306 - 19396423-19397112,19397645-19397916,19398047-19398215     25   8.3  

>04_01_0067 - 673381-673387,675388-678131
          Length = 916

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +2

Query: 65  VIFVKGSVQPWNFHDEERIGTGVEELKSLNDHKNSIKEK 181
           ++ ++GSV+   FH ++ +G  +EELK L D +  +K K
Sbjct: 679 LVNLQGSVE---FHVKKGVGCTLEELKGLKDLRGKLKIK 714


>02_02_0285 + 8582033-8582201,8582375-8582652,8582762-8583394
          Length = 359

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 86  VQPWNFHDEERIGTGVEELKSLNDHKN 166
           ++PW+  D  RIGTG +E      HK+
Sbjct: 50  LEPWDLKDRCRIGTGAQEEWYFFSHKD 76


>11_04_0443 - 17808897-17809110,17809169-17813652
          Length = 1565

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 102  KFHGCTDPFTNITKTALVMNWK 37
            KFH C+D  + I    +  NWK
Sbjct: 1203 KFHSCSDTISRIYMYLMDCNWK 1224


>10_08_0264 - 16320307-16320483,16321181-16321519
          Length = 171

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 262 LRTKLFLLNIKHKLLQ 215
           L   LFL++IKHKLLQ
Sbjct: 121 LALTLFLISIKHKLLQ 136


>05_01_0173 -
           1199668-1199685,1199907-1199969,1200277-1200379,
           1201408-1201514
          Length = 96

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 71  FVKGSVQPWNFHDEERIGTGVEELKSLNDH 160
           F KG   PW+ HD+   G G E    L DH
Sbjct: 68  FKKGMRHPWDGHDDHSHGHGHEHEAPL-DH 96


>02_02_0322 -
           8938101-8938149,8938235-8938458,8938545-8938605,
           8938724-8940761,8940797-8940908,8942037-8942047,
           8942293-8942443
          Length = 881

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 10  ANSVPHNRVLPVHN 51
           ANS PH RVLP+++
Sbjct: 556 ANSAPHERVLPLYS 569


>11_01_0219 -
           1710206-1710246,1710479-1710620,1710699-1710752,
           1710838-1710909,1711631-1711699,1711807-1711848,
           1711946-1712014,1712130-1712267,1712390-1712500,
           1712576-1712726,1713720-1713775,1714076-1714753
          Length = 540

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = +2

Query: 107 DEERIGTGVEELKSLND----HKNSIKEKEKLG 193
           +EE  G G EEL+ L+D     ++  +EKE+LG
Sbjct: 122 EEEEDGEGDEELEELDDVDDEEESEEEEKEELG 154


>07_01_0705 - 5313315-5315219,5315858-5315860
          Length = 635

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 101 FHDEERIGTGVEELKSLND 157
           FHD++R   GVE L SL D
Sbjct: 578 FHDKKRSLEGVEHLTSLKD 596


>06_03_0306 - 19396423-19397112,19397645-19397916,19398047-19398215
          Length = 376

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 86  VQPWNFHDEERIGTGVEELKSLNDHKN 166
           ++PW+  D  RIGTG +       HK+
Sbjct: 50  LEPWDLKDRCRIGTGPQNEWYFFSHKD 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,805,308
Number of Sequences: 37544
Number of extensions: 80464
Number of successful extensions: 225
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)