Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25p14
         (702 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    27   0.76 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    26   1.3  
CR954256-6|CAJ14147.1|  207|Anopheles gambiae predicted protein ...    23   9.3  

>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 26.6 bits (56), Expect = 0.76
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 47  CFRYGESDPRNPTASSC*KTRCGESQRGKEAKS 145
           CFR  +S PR  ++SS   T+ G +  G  A S
Sbjct: 439 CFRRADSAPRGSSSSSSSATKAGAAGAGGTAGS 471


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 8/22 (36%), Positives = 18/22 (81%)
 Frame = +3

Query: 282 ETKVKIEEMNKMVQTQKEAVIK 347
           +TK +IEE+NK ++T ++ +++
Sbjct: 738 QTKEEIEELNKKIETLQKTIVE 759


>CR954256-6|CAJ14147.1|  207|Anopheles gambiae predicted protein
           protein.
          Length = 207

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 37  SFCVFSIWRVRPKESNSF*LLKNALRRKSARQGSEKRNA*SRPRRR 174
           +F   +I R RP++SN   + K   +R+ A + +      +RP RR
Sbjct: 17  NFTKSAINRKRPEKSNGSTVKKTIRKRRPALRSTSGVLRAARPERR 62


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,793
Number of Sequences: 2352
Number of extensions: 10095
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71504505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)