Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25p11
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.6  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   4.7  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   6.3  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   6.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   6.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   6.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   6.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 273 ESLIXXVNDEGGENGP 320
           E +I   NDEGG+  P
Sbjct: 569 EEIINSSNDEGGKTSP 584


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 271 RSKIASLWSEXSGASGFSDDSHNNN 197
           RSK   + S  S +  +S++ +NNN
Sbjct: 297 RSKEPKIISSLSNSCNYSNNYYNNN 321


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 13/64 (20%), Positives = 28/64 (43%)
 Frame = +3

Query: 210 ESSENPLAPLXSDQREAILDLESLIXXVNDEGGENGPIEKETVDRKSIPSVDTTYDFLEW 389
           E++ N  +   S  + +++D E     +   GG      + T   ++  +  T Y F+E 
Sbjct: 257 ETNHNERSTPRSHAKPSLIDDEPTEVTI---GGGGTTSSRRTTGSRAAATTTTVYQFIEE 313

Query: 390 YERL 401
            +R+
Sbjct: 314 RQRI 317


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 13/64 (20%), Positives = 28/64 (43%)
 Frame = +3

Query: 210 ESSENPLAPLXSDQREAILDLESLIXXVNDEGGENGPIEKETVDRKSIPSVDTTYDFLEW 389
           E++ N  +   S  + +++D E     +   GG      + T   ++  +  T Y F+E 
Sbjct: 257 ETNHNERSTPRSHAKPSLIDDEPTEVTI---GGGGTTSSRRTTGSRAAATTTTVYQFIEE 313

Query: 390 YERL 401
            +R+
Sbjct: 314 RQRI 317


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 146 MPYSKHGYDE 175
           +P S+HGYDE
Sbjct: 541 VPDSEHGYDE 550


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 13/64 (20%), Positives = 28/64 (43%)
 Frame = +3

Query: 210 ESSENPLAPLXSDQREAILDLESLIXXVNDEGGENGPIEKETVDRKSIPSVDTTYDFLEW 389
           E++ N  +   S  + +++D E     +   GG      + T   ++  +  T Y F+E 
Sbjct: 257 ETNHNERSTPRSHAKPSLIDDEPTEVTI---GGGGTTSSRRTTGSRAAATTTTVYQFIEE 313

Query: 390 YERL 401
            +R+
Sbjct: 314 RQRI 317


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = +3

Query: 294 NDEGGENGPIEKETVDRKSIPSVDTTYDFLEWYER 398
           +DE  +   +E+E +  K+I  +D     ++W+ +
Sbjct: 28  SDEIEKITTVEEEKICHKAITPLDRLQRVVDWFRK 62


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 231 QVDFQTIPTTITCFVFLLNSSYPCF 157
           ++++ T    +  F F+LN +YP F
Sbjct: 218 RLNYFTEDVGLNHFYFMLNHNYPPF 242


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 231 QVDFQTIPTTITCFVFLLNSSYPCF 157
           ++++ T    +  F F+LN +YP F
Sbjct: 218 RLNYFTEDVGLNHFYFMLNHNYPPF 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,781
Number of Sequences: 438
Number of extensions: 2067
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)