Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25p08
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    29   0.48 
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    27   1.9  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    27   1.9  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    26   4.5  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   4.5  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   4.5  

>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 21/100 (21%), Positives = 42/100 (42%)
 Frame = +1

Query: 325 LCETKDGPFLNIFESDKSTAKKIDELMPFGISENDELPHKICFRCSAKVEELHEFVQKCV 504
           L +  + P     E D +T  K         SE +++ H I F   + V+    F+    
Sbjct: 55  LSKVLNQPNFRFLEMDLATNYKFLYQFMVEDSEINKITHIINFAAESSVDR--SFIDPLY 112

Query: 505 KTQENLLAATGKKDLLNTKTKTREQWEEKLNKTNLSNDDI 624
            T+ N+L+     + +      +E+   +LN  ++S D++
Sbjct: 113 FTKNNILSTQNLLECVRILLGKKEELRNRLNFVHVSTDEV 152


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +1

Query: 256 KNVPNDLLVSAVSVMPVMAKVCRLCETKDGPFLNIFESDKSTAKKIDELM-PFGISENDE 432
           +N PN++    ++V P+++K   L E +    L   ES  +   K++++  P GI E+D+
Sbjct: 418 ENNPNNIPEGILNVFPILSKDSHLQENQPTDILT-DESVIAEDVKLEQVFKPVGIKESDK 476

Query: 433 L 435
           +
Sbjct: 477 M 477


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 100 TFKL*SYVFNQEKQLSVSRLFVGNIYNP 17
           TFK+ +    +EKQ  V RL VG  YNP
Sbjct: 134 TFKVTNIPLLEEKQRHVLRLLVGPRYNP 161


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 472 EELHEFVQKCVKTQENLLAAT-GKKDLLNTKTKTREQWEEKLNKTNLSNDD 621
           E++  ++++ V   E+LL      +D +N   KTR  +EEKL +  +  +D
Sbjct: 3   EKVQYYMEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLND 53


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 23/130 (17%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
 Frame = +1

Query: 268 NDLLVSAVSVMPVMAKVCRLCETKDGPFLNIFESDKSTAKKIDELMPFGISENDELPHKI 447
           N LL S   +  ++ ++    +  D  F +++ +DK  +K      PF  S+ + +   +
Sbjct: 48  NQLLRSIHIIQNLLNELDNYVDRSDCLFHSVWRTDKEKSKFSGNYYPFSPSKMNVITIDL 107

Query: 448 CFRCSAKVEE--LHEFVQKCVKTQENLLAATGKKDLLNTKTKTREQWEEKL--NKTNLSN 615
             R S+  +E  + +  ++  ++   +      K L +  ++  +   + L     N   
Sbjct: 108 SLRSSSTADEKLISQLGEEAHESLLKVHIEKANKHLFSLFSRVEDTSSKILITGDLNAGK 167

Query: 616 DDICDALIRK 645
             +C+AL+ K
Sbjct: 168 STLCNALVHK 177


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 247 GSTKNVPNDLLVSAVSVMPVMAKVCRLCETKD 342
           G T NVP  LL+ +V+   + A  C++ + KD
Sbjct: 223 GDTSNVPQRLLLPSVNDPNIWAVRCKIGKEKD 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,409
Number of Sequences: 5004
Number of extensions: 49738
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)