Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25p08
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0863 + 32536695-32536906,32537832-32538216 31 0.86
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209... 30 1.5
11_01_0485 + 3728686-3728863,3729933-3730095,3730508-3730549,373... 30 2.0
10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719 30 2.0
11_03_0021 + 9010846-9011672,9011753-9013700 29 2.6
08_02_0545 + 18470313-18470669,18470901-18471095,18471183-184713... 29 2.6
03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,570... 28 6.1
12_01_0805 - 7378364-7378435,7378534-7378616,7378843-7379020,737... 28 8.0
09_03_0057 + 11944973-11947159 28 8.0
>01_06_0863 + 32536695-32536906,32537832-32538216
Length = 198
Score = 31.1 bits (67), Expect = 0.86
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +1
Query: 454 RCSAKVEELHEFVQKCVKTQENLLAATGK-KDLLNTKTK-TREQWEEKLNKTNLS 612
RC + E FV+KC KT++ L G+ +L+ +KT+ T E +++ +LS
Sbjct: 43 RCHTEEVEPGRFVRKCEKTEQLLRDCVGRPSELVESKTENTEEDVTDEMKSGSLS 97
>12_02_0795 +
23217463-23217684,23218296-23219155,23220001-23220929,
23221184-23221968
Length = 931
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Frame = +1
Query: 388 KIDELMPFGISENDELPHKICFR----CSAKVEEL-HEFVQKCVKTQENLLAATGKKDLL 552
++ E+MP I + L K F C +++E+ +E ++KC + LA LL
Sbjct: 411 RVFEIMPLSIDNSKSLFLKRIFGSKDVCIPQLDEVCYEILKKCGGSP---LAIITIASLL 467
Query: 553 NTKTKTREQWEEKLNK--TNLSNDDICDALIRKAMEAIKDMP 672
K T+E+WE N + L D + + R + D+P
Sbjct: 468 ANKANTKEEWERVRNSIGSTLQKDPDVEEMRRILSLSYDDLP 509
>11_01_0485 +
3728686-3728863,3729933-3730095,3730508-3730549,
3730833-3730927,3731273-3731334,3731416-3731507,
3731587-3731722,3731818-3731904,3732430-3732519,
3732969-3733071,3733616-3733716,3733837-3733971,
3734006-3734093,3734484-3734544,3734626-3734689,
3735219-3735347
Length = 541
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 383 AVDLSDSKIFKKGPSFVSHNLHTFAMTGMTDTADTN 276
AVD+ GP H L+TF +TG+ D TN
Sbjct: 143 AVDIKPGSEIVSGPQKDGHLLYTFDITGLNDQDKTN 178
>10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719
Length = 780
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Frame = +1
Query: 430 ELPHKICFRCSAKVEELHEFVQKCVKTQENL-LAATGKKDLLNTKTKTREQWEEKLNKTN 606
E+ F S K +E E ++K V+ + LAA +L +T T ++W++ L K+N
Sbjct: 317 EIIQSKAFSLSKKSDEHFEVLRKIVQRCDGSPLAAQSFGSVLFNRT-TLQEWKDILAKSN 375
Query: 607 LSN--DDICDALIRKAMEAIKDMPL 675
+ N +DI ++R + + D+PL
Sbjct: 376 ICNEGEDIIFPILRLSYD---DLPL 397
>11_03_0021 + 9010846-9011672,9011753-9013700
Length = 924
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 457 CSAKVEELHEFV-QKCVKTQENLLAATGKKDLLNTKTKTREQWEEKLNK--TNLSNDDIC 627
C + +EEL + + +KC LA LL TK+ T+E+WE LN + L N
Sbjct: 353 CPSHLEELSKAILRKCGGLP---LAILHIASLLATKSNTKEEWELVLNSIGSALENSHTL 409
Query: 628 DALIRKAMEAIKDMP 672
L + + + D+P
Sbjct: 410 QGLKKILLLSFYDLP 424
>08_02_0545 +
18470313-18470669,18470901-18471095,18471183-18471362,
18471462-18471656,18472081-18472179,18472271-18472780,
18472896-18473225
Length = 621
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Frame = +1
Query: 394 DELMPFGISENDELPHKICFRCSAKV--EELHEFVQKCVKTQENLLAATGKKD----LLN 555
D++ G+ ++ + R KV +++H + Q++L AAT +KD LN
Sbjct: 241 DQVKQIGVGIDEVKRDRQAVRDKIKVLEDQIHAVDGEIAALQDDLTAATARKDKAFEALN 300
Query: 556 TKTKTREQWEEKLNKTNLSNDDICDALIRKAMEAIKDM 669
KTR+ ++ ++ + D R +EA++ +
Sbjct: 301 ELRKTRDLNNTSFHQYRTISNSVRDLSARGEVEAVQQL 338
>03_02_0114 +
5704002-5704037,5704547-5704666,5705040-5705076,
5705905-5705981,5706642-5706755,5706902-5706969,
5707051-5707129,5707367-5707511,5707627-5707731,
5707917-5707994,5708192-5708247,5708533-5708651,
5708853-5709096,5709203-5709385,5709956-5710264,
5710350-5710399,5711042-5711102,5711184-5711267,
5711461-5711577,5711665-5711831,5711938-5712010,
5712497-5712581,5712693-5712886,5713073-5713228
Length = 918
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 505 KTQENLL-AATGKKDLLNTKTKTREQWEEKLNKTNLSNDDICDALIRKAMEAIK 663
KT+ +L AT + D+LN K K + + N +S+ +CD+ ++ + K
Sbjct: 694 KTKADLEEVATAEADILNLKQKVSDLRGQLNNNVQMSSTSLCDSCNKRLLSTDK 747
>12_01_0805 -
7378364-7378435,7378534-7378616,7378843-7379020,
7379822-7379977,7380205-7380308,7381653-7381695,
7382142-7382234,7382391-7382686,7382795-7382942,
7383577-7383615
Length = 403
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 535 GKKDLLNTKTKTREQWE--EKLNKTNLSNDDICDALIRKAMEAIKD 666
G + + +T +WE EK+ N S+ DIC L K ++ KD
Sbjct: 97 GNQQKVLRETFNNHKWELKEKIKSNNTSHVDICKLLYAKKNKSQKD 142
>09_03_0057 + 11944973-11947159
Length = 728
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Frame = -2
Query: 467 LAEHRKHIL*GNSSFSEIPKGISS-SIFLAVDLSDSKI-----FKKGPSFVSHNLHTFAM 306
++EH I+ G + ++IP+G+ SI + LS++ + +K S V H + T+ +
Sbjct: 568 ISEHECFIVKGETDLTKIPQGVRHLSIIGSSSLSETNLIMVCKYKTLRSIVCHGVETYIL 627
Query: 305 TGM 297
T +
Sbjct: 628 TAV 630
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,645,718
Number of Sequences: 37544
Number of extensions: 253633
Number of successful extensions: 678
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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