Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25p08
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016669-2|AAB66099.2|  455|Caenorhabditis elegans Hypothetical ...    30   1.4  
U40160-3|AAA81157.2|  363|Caenorhabditis elegans Nuclear hormone...    29   3.1  
AL021491-1|CAA16373.2|  319|Caenorhabditis elegans Hypothetical ...    29   3.1  
AL132948-33|CAD57708.2|  734|Caenorhabditis elegans Hypothetical...    27   9.6  
AL132948-32|CAD31833.3|  731|Caenorhabditis elegans Hypothetical...    27   9.6  

>AF016669-2|AAB66099.2|  455|Caenorhabditis elegans Hypothetical
           protein K10G6.4 protein.
          Length = 455

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 442 KICFRCSAKVEELHEFVQKCVKTQENLLAATGKKDL 549
           K+C +   K+E+LH  ++KC + QE+L  A   + +
Sbjct: 306 KLCEQKDLKIEDLHSQLEKCDRLQESLEKADRSRQI 341


>U40160-3|AAA81157.2|  363|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 137, isoform a protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 382 AKKIDELMPFGISENDELPHKICFRCSAKVEELHEFVQK 498
           AKK+ +L  F  S+ +EL    CF  +  +E +  +  K
Sbjct: 178 AKKLPDLSKFSDSDKEELIRNSCFTIAIAIEAIESYFDK 216


>AL021491-1|CAA16373.2|  319|Caenorhabditis elegans Hypothetical
           protein Y44A6B.1 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -3

Query: 232 IVSLILTSLFS*PLLKFFNTYYYCLYYSMP-RNKFDPI 122
           ++ ++ TS+FS  L+  FN Y +C+ Y+ P +NK   +
Sbjct: 3   LIFVVFTSIFSVSLV--FNLYLFCVIYAQPDKNKLPTV 38


>AL132948-33|CAD57708.2|  734|Caenorhabditis elegans Hypothetical
           protein Y39B6A.43b protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 422 SEIPKGISSSIFLAVDLSDSKIFKKGPSFVSHNLHT 315
           SEIPK    +++  +D    +IF + P +V  N +T
Sbjct: 14  SEIPKNAEKTVYKYIDEQGIEIFIEDPIYVEENGNT 49


>AL132948-32|CAD31833.3|  731|Caenorhabditis elegans Hypothetical
           protein Y39B6A.43a protein.
          Length = 731

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 422 SEIPKGISSSIFLAVDLSDSKIFKKGPSFVSHNLHT 315
           SEIPK    +++  +D    +IF + P +V  N +T
Sbjct: 14  SEIPKNAEKTVYKYIDEQGIEIFIEDPIYVEENGNT 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,961,407
Number of Sequences: 27780
Number of extensions: 269039
Number of successful extensions: 841
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)