Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25p06
         (495 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-1|AAG38886.2|  272|Caenorhabditis elegans Hypothetical pr...    31   0.35 
U70849-5|AAF99922.2|  400|Caenorhabditis elegans Phosphatidylser...    30   1.1  
U28409-5|AAC46591.1|  246|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81127-3|CAB03388.2|  310|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF022979-9|AAB69904.1|  466|Caenorhabditis elegans Hypothetical ...    27   5.7  
Z75541-5|CAE17852.1|  291|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF040653-2|ABC48247.1|  343|Caenorhabditis elegans Hypothetical ...    27   9.9  

>U28735-1|AAG38886.2|  272|Caenorhabditis elegans Hypothetical
           protein F48E3.9 protein.
          Length = 272

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 15/67 (22%), Positives = 35/67 (52%)
 Frame = +1

Query: 1   NVNSIPTAQIHHNGENLKGKRDRNRSPLRQKLVFYHQRLLNTKTENTVLKKTRIDLVQRL 180
           +++ + T+ +H   E     +D     +   +++   +LL  ++E+  LK   ++  +R+
Sbjct: 53  DISHLQTSMMHLRDE--VSSKDNELKSMNDDILYLKSQLLIVESESRELKAKDLENQERI 110

Query: 181 HAYIAKT 201
           HAYI +T
Sbjct: 111 HAYIQQT 117


>U70849-5|AAF99922.2|  400|Caenorhabditis elegans Phosphatidylserine
           receptor familyprotein 1, isoform a protein.
          Length = 400

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 34  HNGENLKGKRDRNRSPLRQKLVFYHQRLLNTKTEN 138
           +  +N K   D N + +R K+ +YH  +LN K ++
Sbjct: 99  YRNQNFKCGEDDNGNSVRMKMKYYHDYMLNNKDDS 133


>U28409-5|AAC46591.1|  246|Caenorhabditis elegans Hypothetical
           protein T25D10.4 protein.
          Length = 246

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +3

Query: 3   REQHSNSADTPQRGEFERQEGPE*EPAQAKTCILPSETTK 122
           R  H NS D+       +   P      A T ILPS+TTK
Sbjct: 179 RTLHVNSDDSDSSSSGSKTHSPSSSVYNASTLILPSKTTK 218


>Z81127-3|CAB03388.2|  310|Caenorhabditis elegans Hypothetical
           protein T22G5.3 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 100 FYHQRLLNTKTENTVLKKTRIDLVQRLHAYIAK 198
           F  Q LLNT  +N V+ KT++     L+AYI K
Sbjct: 222 FTRQDLLNTNCQNLVIDKTKL-TNNDLNAYIKK 253


>AF022979-9|AAB69904.1|  466|Caenorhabditis elegans Hypothetical
           protein T02B11.6 protein.
          Length = 466

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -3

Query: 238 FSPFLKVSYLFGTFLQCTRVA---FAPNRYASSSVLCFQFWYLVVSD 107
           FSPF  V     T   CT      F+   ++ +  LCF  WY V SD
Sbjct: 171 FSPFATVITTAVTGFLCTSSLGWRFSFYVHSIAGALCFVLWYFVYSD 217


>Z75541-5|CAE17852.1|  291|Caenorhabditis elegans Hypothetical
           protein F52B5.7 protein.
          Length = 291

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -3

Query: 370 CNKILPADGA---IPSHCTLAPILLSPKHYFTHSPRTLALDLGPSSF 239
           C + +PA+     IP+   L PI   PK     SP     DL PSSF
Sbjct: 53  CEEKVPAEDTATKIPTSECLEPIEQPPKKMIRISPTPPVKDLVPSSF 99


>AF040653-2|ABC48247.1|  343|Caenorhabditis elegans Hypothetical
           protein K05F6.11 protein.
          Length = 343

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 169 PNRYASSSVLCFQFWYLVVSDGRIQVFA*AGSYSGPSCLS 50
           PN Y+ S VL F+F   + S   ++VF+  G ++  S ++
Sbjct: 275 PNLYSQSQVLRFKFSSDLKSTEMVEVFSDDGRFTAASAIA 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,824,330
Number of Sequences: 27780
Number of extensions: 255022
Number of successful extensions: 725
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)