Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25p06
         (495 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   5.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +1

Query: 28   IHHNGENLKGKRDRNRSPLRQKLVFYHQRLLNTKT 132
            + ++G  + GK+  ++   +Q+ +    +LLN KT
Sbjct: 1218 VSNSGSVVLGKQQPSQQQTQQQPIILPSQLLNIKT 1252


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 304 SPKHYFTHSPRTLALDL 254
           SP HY   SP T  +DL
Sbjct: 42  SPDHYERFSPSTHLMDL 58


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 49  LKGKRDRNRSPLRQKLVFY 105
           ++   +RNRSP+R   V Y
Sbjct: 328 MRNDSERNRSPVRPATVQY 346


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 371 VGPNLIMGSI*LFFLLAGLVLKHLI 445
           VG    +G I + FLLAG+V   LI
Sbjct: 150 VGRTHTVGYIIIGFLLAGIVQPFLI 174


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = -3

Query: 304  SPKHYFTHSPRTLALDLGPSSFFSPF 227
            +P  Y    P+   + +GP +  +PF
Sbjct: 955  APNFYMPSEPKAPMILVGPGTGIAPF 980


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,871
Number of Sequences: 438
Number of extensions: 3223
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)