Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25o24
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...   146   3e-36
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    29   0.61 
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    27   2.5  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    27   2.5  
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    27   3.3  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    27   3.3  
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch...    25   7.5  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    25   9.9  

>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score =  146 bits (353), Expect = 3e-36
 Identities = 68/129 (52%), Positives = 85/129 (65%)
 Frame = +3

Query: 249 HPPHNPWNHSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEA 428
           H   + W  S   S  DHAS+RRG++VY++VC ACHSL  IA+R+LV VTHT DEAK  A
Sbjct: 71  HFIQHDWPQSKVLSGFDHASLRRGFQVYREVCSACHSLNLIAWRHLVGVTHTADEAKQMA 130

Query: 429 AEVMIKDGPDEEGNYFERPGKLSDYLPSXXXXXXXXXXXXXXXXXXDLSLICSGRKGGED 608
           +EV  +DGPD+EGN F+RPGKLSD+LP                   DLS +  GR GG+D
Sbjct: 131 SEVEYEDGPDDEGNMFKRPGKLSDFLPPPYPNVEAARASNNGAAPPDLSCVVRGRHGGQD 190

Query: 609 YIFALLTGY 635
           YI++LLTGY
Sbjct: 191 YIYSLLTGY 199


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 195 QHLHLPLPKWTATLFCFLSILECWWTADKPEA 100
           +H ++PLPK  A +FC    L C++T    E+
Sbjct: 822 KHQNIPLPKTCAAIFCGNDELVCFFTIKADES 853


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -3

Query: 170 SGQPHFSVFCPSLSVGGQLTSLRPN*TIFFQKTCPTNPTDGGRHV*KPS 24
           +GQ    V C  L++ G     +     + +K C  NP+ G  H   PS
Sbjct: 30  AGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPS 78


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 71  TSFEKIWSSLASGLSAV 121
           +SFEKI+SS+ SGL AV
Sbjct: 159 SSFEKIYSSIVSGLVAV 175


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -3

Query: 167 GQPHFSVFCPSLSVGGQLTSLRPN*TIFFQKTCPTNPTDGGRHV*KPS 24
           GQ    V C  L++ G     +     + +K C  NP+ G  H   PS
Sbjct: 31  GQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPS 78


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -3

Query: 167 GQPHFSVFCPSLSVGGQLTSLRPN*TIFFQKTCPTNPTDGGRHV*KPS 24
           GQ    V C  L++ G     +     + +K C  NP+ G  H   PS
Sbjct: 31  GQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPS 78


>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
           Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 40  WRPPSVGFVGHVF*KNM 90
           W+ PS+GFV  +F  N+
Sbjct: 61  WKSPSIGFVNRIFHPNI 77


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -1

Query: 241 EPDACTDCSS--AKSRAPTPPPTTP 173
           EPD  T  ++  AK   PTP P+TP
Sbjct: 27  EPDETTSTATGIAKVSIPTPKPSTP 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,839
Number of Sequences: 5004
Number of extensions: 56137
Number of successful extensions: 176
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)