Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25o17
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...   163   2e-41
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    31   0.21 
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    27   2.0  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   4.5  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            25   7.9  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   7.9  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   7.9  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score =  163 bits (396), Expect = 2e-41
 Identities = 82/167 (49%), Positives = 106/167 (63%), Gaps = 6/167 (3%)
 Frame = +3

Query: 165 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 344
           EV I SAVRTPM                   +  A+ER  I   ++ EV++GNV SANLG
Sbjct: 5   EVYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANLG 64

Query: 345 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 524
           Q PARQ  + AGLP+S +CTTVNKVCASGMK+ +L AQ + TG  +I++AGG ESMSN P
Sbjct: 65  QNPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNAP 124

Query: 525 FYLKRGE--TSYGGMQLVDGIVFDGLTDVYNKFHMGN----CAEKHS 647
           +Y  +      YG ++LVDG++ DGL+D Y+   MGN    CAE+HS
Sbjct: 125 YYAPKNRFGAKYGNVELVDGLLRDGLSDAYDGLPMGNAAELCAEEHS 171


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 405 TVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSN 518
           T    CA+G  +I  A   ++ G  D+I+AGG ES  N
Sbjct: 165 TTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCIN 202


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -1

Query: 190 LTADAITTSLRETLVENAAIAVNIGFILMLIILFPFKKIMIYSLQIYFEYSRT 32
           +T+D +  +LRETLV N A +  +   L   +     +I I +L IY E  +T
Sbjct: 229 ITSDDLKIALRETLVANDAFSKLLLPALFERLKASTVRIKIDALNIYIEACKT 281


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 365 CNICRFAKKYHMYNCKQSMC 424
           CN+C +  KY   NC  S C
Sbjct: 102 CNVCGYWGKYACQNCGTSYC 121


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 102 NIKMKPIFTAMAAFSTKVSLNEVVIASAV 188
           N K    F   +AFST +SLN+ ++ S +
Sbjct: 256 NFKCLDAFDLRSAFSTYLSLNQPMVVSVI 284


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 317 WQCLFCKFGPSTCKTSCNICRFAKKYHM 400
           W C  C F     +TSC  C F    H+
Sbjct: 347 WNCPMCGFSNFQRRTSCFRCSFPGPTHV 374


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 440 RFHARGTYFVYSCTYGTF 387
           RF  R  Y +YSC YG+F
Sbjct: 467 RFLRRLLYHLYSCQYGSF 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,539
Number of Sequences: 5004
Number of extensions: 59939
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)