Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25o12
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 31 0.22
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 29 0.51
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 28 1.2
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|... 28 1.6
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po... 27 2.1
SPAC19A8.09 |||ER to Golgi transport protein Yos1|Schizosaccharo... 27 3.6
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 26 6.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.3
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 6.3
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 25 8.4
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/66 (21%), Positives = 30/66 (45%)
Frame = +2
Query: 110 ELSTYDEVDVDELLSKLTQEELTMLAKEVDPDDNFLPPSQRNNYACEKDPTGPLNRKKLI 289
E S + + V++ +++ E L ++ P +PP Q N P+GP+ L+
Sbjct: 907 EASQTESILVEKEATRVANEALRAVSSFRRPPRQLIPPQQSTNVPGTSKPSGPITSSTLL 966
Query: 290 EHINKQ 307
+ ++
Sbjct: 967 ARLKQR 972
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 29.5 bits (63), Expect = 0.51
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Frame = +2
Query: 101 YGRELSTYDEVDVDELLSKLTQEE-LTMLAKEVDPDDNFLPPSQRNNYACEKDPTGPLNR 277
Y T V+V K E L + + P D + ++ + C K+ +
Sbjct: 133 YAEAFDTTKNVEVSSFPEKSMNENVLIQHSLNLAPSDKEISSTEESEQLCYKEQE---SE 189
Query: 278 KKLIEHINKQALETPDRPEVKPFVPGVVRGKKWIPPPPPEKVRDAEEQITIDLGDEYE 451
K+L N +L+ + P + V + PPPP + A+EQ++ + DE++
Sbjct: 190 KELYSKDNDDSLDILNVPNL---VNDDIANNNAAPPPP---LAQAQEQLSTENEDEFD 241
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 380 PPPPPEKVRDAEEQITIDLGDEYEQALGTASQEEIIDL 493
PP PP R+A I+ + + GT++ +I+ L
Sbjct: 76 PPAPPTHQREASPVKNIEHSESFPSVFGTSNNHQIVPL 113
>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 187
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -2
Query: 223 RWKEIVVRINLLCQHGQFFLSELGQELVHVHFV 125
R KEI R+ + C+ + F+ L ++++ HF+
Sbjct: 57 RLKEIYCRLKIRCRLKKKFIKSLSKKIISYHFI 89
>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 439
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 275 RKKLIEHINKQALETPDRPEVKPFVPGVVRGKKWIPPPPPEKVRDAEEQITIDLGDE 445
R+ L E + E RP++K F+P + +I PPE + D + + + + DE
Sbjct: 217 RRALFEQMGGAYPELITRPDIKVFLPPIGGLTAYI-FGPPEYLSDTSKSLAVRVHDE 272
>SPAC19A8.09 |||ER to Golgi transport protein
Yos1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 81
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -2
Query: 715 NIIPIEISQLLVILLHSSDRFIRVRVVGRVHWEYLGFSGFGDAVPS-ESDGLALVQKRRV 539
NI+ + + L + + S DRF+ GR+ W GFGD + +S L L++ R
Sbjct: 6 NILYVTLLLLNAVAILSEDRFL-----GRIGWSQSAALGFGDRQDTIKSRILHLIRAIRT 60
Query: 538 IL 533
++
Sbjct: 61 VM 62
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 248 EKDPTGPLNRKKLIEHINKQALETPDRPEVKPFVPGVVRGKKWIPPPPP 394
+ D L +K LI+ NK ++ +P V+ P W PPPPP
Sbjct: 11 QDDSLDILQKKVLIDAFNKVTID--GKPNVQHQQPTY-----WYPPPPP 52
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/64 (25%), Positives = 23/64 (35%)
Frame = +2
Query: 218 PPSQRNNYACEKDPTGPLNRKKLIEHINKQALETPDRPEVKPFVPGVVRGKKWIPPPPPE 397
PPS + P P+ + IN + P + + KK PPPPP
Sbjct: 258 PPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPP 317
Query: 398 KVRD 409
R+
Sbjct: 318 SRRN 321
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 611 KVFPMDPPNDTDPDETIARVQQNDQKLTDLNWNNI 715
KV+P+ P+D+ ++ V+ +++KLT W N+
Sbjct: 424 KVYPVKSPSDSHCKVSLPAVRDHEEKLT-YWWKNL 457
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3
Query: 480 SSCDAVPRACS--YSSPRSIVICSSASRTFSGGGGGIHF 370
SS + +P A +SP S + SSAS T GG G+ F
Sbjct: 211 SSLNGIPIASPPLATSPTSFSLASSASSTNLGGSKGLLF 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,586
Number of Sequences: 5004
Number of extensions: 60491
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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