Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25o09
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom...    49   6e-07
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    43   4e-05
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    29   0.54 
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    29   0.95 
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    29   0.95 
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    27   2.2  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    27   2.2  
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    27   3.8  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   5.1  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.7  

>SPBC428.13c |mob1||protein kinase regulator
           Mob1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
 Frame = +2

Query: 311 VQQFIQQTIRRDPSNLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCT 490
           ++Q+ + T+    S +EA+ K+P+  D   W   +   F  ++N L   +   C   +C 
Sbjct: 26  LRQYAEATLGSG-SLMEAV-KLPKGEDLNEWIAMNTMDFYTQINMLYGTITEFCTAASCP 83

Query: 491 QMTATEQWIFLCAAHK---TPKECPAIDYTRHTLDGAACLLNSNKYFPSRVNIK-DSSIA 658
           QM A   + +     K    P    A DY  + LD     L+  K FP+ + ++   +  
Sbjct: 84  QMNAGPSYEYYWQDDKIYTKPTRMSAPDYINNLLDWTQEKLDDKKLFPTEIGVEFPKNFR 143

Query: 659 K-LGSVCRRVYRIFSHAYFHH 718
           K +  + RR++RI++H Y  H
Sbjct: 144 KVIQQIFRRLFRIYAHIYCSH 164


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 3/125 (2%)
 Frame = +2

Query: 353 NLEAILKMPEVLDEGVWKYEHLRQFCMELNGLAVRLQNECKPETCTQMTATEQWIFLCAA 532
           N   I+ +P  +D   W   ++ +    LN         C  +TC  M+A   + +    
Sbjct: 69  NFSTIVSLPRFVDLDEWVALNVYELFTYLNHFYDVFATFCTVKTCPVMSAAANFDYTWLD 128

Query: 533 H-KTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVNIKDSS--IAKLGSVCRRVYRIFSH 703
           + + P   PA  Y  + L      L+    FP++  +   S  +  + ++ ++++RIF+H
Sbjct: 129 NNRKPVHLPAPQYIEYVLAWIENRLHDQNVFPTKAGLPFPSNFLVIVKAIYKQMFRIFAH 188

Query: 704 AYFHH 718
            Y+ H
Sbjct: 189 MYYAH 193


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 530  AHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVNIKDSSIAKLGSVCRR 682
            A K PK   +IDYT +  D    LLN+ K   S +   +   + +  + +R
Sbjct: 883  AEKLPKHSTSIDYTLYAKDDPLYLLNTTKALRSCILSTEERASNMKEIIQR 933


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 242 RVDCVGVFELRRSFLLVEWRQDTFVCLYWFEC*QASD 132
           +V  +G+F +RR  +++ W     +C   F C ++ D
Sbjct: 221 KVISIGLFNIRREMMIIIWLLWLIICCILFGCVKSGD 257


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 242 RVDCVGVFELRRSFLLVEWRQDTFVCLYWFEC*QASD 132
           +V  +G+F +RR  +++ W     +C   F C ++ D
Sbjct: 188 KVISIGLFNIRREMMIIIWLLWLIICCILFGCVKSGD 224


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 638 CSPCLESIYCYSTSKLLHLECAVC-NQW 558
           CS C+E I+C + ++  H+ C  C N W
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCINGW 283


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 182 VAIPPKEMTDGVQILRRNRPGTKAKDFCRWPDEPFEEMDSTLAVQQFIQQ 331
           V  PP +  + V++LRR +   KAKD  ++P+E F   D    +   ++Q
Sbjct: 244 VGKPPFKAPNHVELLRRIQ---KAKDVIKFPEEAFIHPDIKTLICALLKQ 290


>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +2

Query: 524 CAAHKTPKECPAIDYT--RHTLDGAACLLNSNKYFPSRVNIKDSSIAK 661
           C A  TP++   +D T     L GA C++N         NIK S I K
Sbjct: 345 CIAKLTPEQ-RLVDVTVSERALVGADCMVNEGTTIKDNSNIKKSIIGK 391


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 301 AIHFFKGFIRPATEVLGFGAGSIASEYLNSVG 206
           A+H +K   RP T+  G    S+  +YL   G
Sbjct: 92  AMHGYKVSFRPGTDHAGIATQSVVEKYLQKKG 123


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = -3

Query: 477 GLHSFCRRTAN--PLSSIQN--CLRCSYFQTPSSNTSGIFKIASRFEGSRRIV 331
           G+ S  +R+AN  P +S  N   +  S+ +  S+++S  F + S F G+ R+V
Sbjct: 448 GIKSSQQRSANASPATSPSNQASIHASFTKESSTHSSPSFTLESLFSGAPRVV 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,286,186
Number of Sequences: 5004
Number of extensions: 73518
Number of successful extensions: 220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)