Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25o08
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    28   0.80 
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    28   1.1  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    27   1.8  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    27   1.8  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   5.6  
SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyce...    25   5.6  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   7.4  

>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +3

Query: 108 TITCASAVKHYHSLVRLIFSMILKRNDAIFLLMSAAKAVLHQCSYPHSTNIWKHDKTSDT 287
           ++T  S+ K +  L+ L  S I+ R           ++++ Q S PHS+ + KH   S  
Sbjct: 226 SLTSPSSAKEFKQLLTLKQSTIIPRTP-----QKTVRSIVKQTSSPHSSKMPKHSLPSSP 280

Query: 288 T 290
           T
Sbjct: 281 T 281


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 102 VATITCASAVKHYHSLVRLIFSMILKRNDAIFLLMSAA 215
           +A +T +   +H H LV+L++  IL R  + F   SAA
Sbjct: 493 LALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAA 530


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -2

Query: 252 LSGGRNTGATRPSQLTLAGKSHRS 181
           LSG RNT A+RP+ L  AG S  S
Sbjct: 554 LSGARNTAASRPTNLA-AGNSSAS 576


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 217 FAADISRKIASFLLRIIEKIRRTSE 143
           F  DISR+IASFL   + + R  +E
Sbjct: 574 FGRDISRRIASFLSDYLSRAREVNE 598


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 234 CSYPHSTNIWKHDKTSDTTFKG 299
           C Y  +  ++KHD  +D TF+G
Sbjct: 142 CWYSETMGMFKHDLYNDLTFQG 163


>SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 274 KHQTLLLKDSMKNFLENFNR 333
           +H+ LLL+DS  NFL++ +R
Sbjct: 42  EHKDLLLQDSDNNFLKHLSR 61


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 246 HSTNIWKHDKTSDTTFKGLYEKLLGKF*SFILN 344
           H+T++ KH   S+T++  L   L  KF   +L+
Sbjct: 57  HTTSVLKHHNVSNTSYCNLSPSLFIKFAEDVLS 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,259
Number of Sequences: 5004
Number of extensions: 39384
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)