Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25o08
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173...    29   1.9  
12_01_1055 - 10861665-10861829,10862827-10863171,10864374-108646...    28   5.7  
05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449     28   5.7  
07_03_0121 - 13673432-13673446,13673564-13673791                       27   7.5  

>03_01_0219 +
           1731267-1731728,1732148-1732235,1732330-1732417,
           1732528-1732573,1732687-1732785,1734363-1734431,
           1735706-1736036,1736123-1736256,1736400-1737251
          Length = 722

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 185 RCDFPANVSCEGRVAPVFLPPLNKHLEARQ 274
           +C+  ANVSC+G  +    PPL +H  +R+
Sbjct: 568 KCENGANVSCDGVGSTGQTPPLQQHSHSRE 597


>12_01_1055 -
           10861665-10861829,10862827-10863171,10864374-10864682,
           10864813-10864968,10865669-10866117,10869275-10869359,
           10869944-10870300,10870672-10871076
          Length = 756

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 90  PIMCVATITCASAVKHYHSLVRLI 161
           P+ C+A ++  SAV+H+H   R++
Sbjct: 3   PLCCIAPVSLDSAVEHHHQPPRIL 26


>05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449
          Length = 604

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
 Frame = +3

Query: 24  VTVIRNRHYLYVLKKVRTANL*PIMCVAT-ITCASAVKHYHSLVRLIFSMILKRNDAIFL 200
           VT++   H+  V+K +   N  P+ CV T   C  +       +R     + ++   +  
Sbjct: 345 VTILARLHHRNVIKLIGACNAPPVFCVITEFLCGGS-------LRAFLRKLQRQKLPLEK 397

Query: 201 LMSAAKAVLHQCSYPHSTNIWKHD-KTSDTTFKG 299
           ++  A  + H   Y HS  +   D K  +  F G
Sbjct: 398 IICIALDIAHGLEYIHSQRVIHRDVKPENILFDG 431


>07_03_0121 - 13673432-13673446,13673564-13673791
          Length = 80

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 205 CQLRRPCCTSVPTPTQQT 258
           C LRRP C   PTP Q +
Sbjct: 30  CALRRPSCPEPPTPLQSS 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,379,966
Number of Sequences: 37544
Number of extensions: 229233
Number of successful extensions: 470
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)