Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25o08
(553 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17) 44 8e-05
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_10326| Best HMM Match : CBM_14 (HMM E-Value=5.3e-15) 39 0.002
SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18) 38 0.007
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29) 35 0.051
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15) 35 0.051
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.089
SB_56964| Best HMM Match : Zona_pellucida (HMM E-Value=0) 30 1.4
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 1.9
SB_44060| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10) 29 3.3
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10) 29 3.3
SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14) 28 4.4
SB_48824| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_41871| Best HMM Match : YabP (HMM E-Value=0.95) 28 5.8
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +2
Query: 74 NGKLVAHNVCSHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVSCEGR 223
NGK N C+ + MC +G + CPSNL YDP K RC++ V C R
Sbjct: 523 NGKYADANNCNGFVMCSNGYIYYMDCPSNLRYDPAKGRCEWADTVDCGQR 572
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +2
Query: 35 PKQALSLCAQEGSNGKLVAHNVCSHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVSC 214
P S +E NG + C+ + C +G CP NL +D +K C++P V+C
Sbjct: 589 PTPPKSPFCEEKKNGDYADPSNCNGFITCSNGYAYKRDCPFNLKFDTKKLECEWPNKVNC 648
Query: 215 EGRVAPVFLPPLNK 256
+ R P +P + K
Sbjct: 649 KSR--PTTVPYVTK 660
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 56 CAQEGSNGKLVAHNVCSHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVSCEGRVAPV 235
CA E S+G + C + C + T + CP NL ++P + CD P NV C P
Sbjct: 443 CA-ERSDGDYQDPDACEGFISCSNHITYHMPCPENLRFNPTTKHCDNPENVQCGPTRPPT 501
Query: 236 -FLPPLNK 256
+PP K
Sbjct: 502 PKVPPTTK 509
Score = 40.7 bits (91), Expect = 8e-04
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +2
Query: 29 CDPKQALSLCAQEGSNGKLVAHNVCSHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANV 208
C C E S+G C + MC +G T + CP +DP K+RC+ +
Sbjct: 369 CSGSSGSGFC-HEKSDGNYKDSGNCHGFIMCSNGHTYHMTCPGQTNFDPAKKRCE---DY 424
Query: 209 SCEGR 223
C GR
Sbjct: 425 DCSGR 429
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = +2
Query: 35 PKQALSLCAQEGSNGKLVAHNVCSHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVSC 214
P C + G+ HN C Y +C G C L ++ +RCD P NV C
Sbjct: 664 PSGNSEFCKKNGNGRYRDPHN-CLGYIVCRGGNIYFRNCRRGLRFNGVTKRCDLPRNVKC 722
Query: 215 EG 220
G
Sbjct: 723 AG 724
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 65 EGSNGKLVAHNVCSHYHMCVSGKTLSLA-CPSNLFYDPQKERCDFPANV-SCEG 220
E +G + C+ Y C +G T++ CP+ L ++ CD+P+NV C G
Sbjct: 318 ERQDGNYADSSNCNLYITCSNGFTIANRHCPTGLAFNEAIGMCDYPSNVPGCSG 371
>SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17)
Length = 225
Score = 44.0 bits (99), Expect = 8e-05
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 47 LSLCAQEGSNGKLVAHNVCSHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVSCEG 220
LS + ++G + C Y C +G + CP+ L ++ +K+ CD+P N CEG
Sbjct: 82 LSTICKNRADGNYPHPDFCKMYIACSNGIAYEMPCPAGLNWNDEKKYCDWPFNAPCEG 139
>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +2
Query: 11 NTGPCNCDPKQALSLCAQEGSNGKLVAHNVCSHYHMCVSGKTLSLACPSNLFYDPQKERC 190
N P P + CA + ++G CS Y+ C G++ CP L ++ + C
Sbjct: 213 NIPPGKATPAEDEKFCAGK-TDGTYADPKDCSAYYQCKKGRSFKKFCPDGLKFNALIKSC 271
Query: 191 DFPANVSC 214
D P+ V+C
Sbjct: 272 DEPSKVNC 279
>SB_10326| Best HMM Match : CBM_14 (HMM E-Value=5.3e-15)
Length = 134
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +2
Query: 53 LCAQEGSNGKLVAHNVCSHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVSCEGRVAP 232
LCA + L C HY+ C GK + C +DP+ C++ C G AP
Sbjct: 21 LCADKPHGAYLPDSTSCQHYYHCTWGKAVRKDCGPGRVWDPRITNCNWDWAYKCVGTPAP 80
>SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18)
Length = 123
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 50 SLCAQEGSNGKLVAHNVCSHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVSCE 217
S C + +NG C Y C + T CP+ L ++ K+ CD+P N CE
Sbjct: 60 SFCKKR-ANGDYAHPENCKMYITCSNKITYERQCPAGLNWNDAKKWCDWPKNAPCE 114
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 35.9 bits (79), Expect = 0.022
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 101 CSHYHMC-VSGKTLSLACPSNLFYDPQKERCDFPANVSCEGRVAPV 235
CS ++ C S KT CP L + +K CD P V C+ + V
Sbjct: 1357 CSRFYQCDASHKTFLHRCPDGLKWSVKKTACDLPLYVDCDRTIPTV 1402
Score = 34.7 bits (76), Expect = 0.051
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 74 NGKLVAHNVCSHYHMCVS-GKTLSLACPSNLFYDPQKERCDFPANVSCE 217
NG CS ++ C + KT CP+ L + +K CD+P V C+
Sbjct: 1143 NGHYADPRDCSRFYQCDAFHKTFLHRCPAGLKWSVKKTACDWPRYVDCD 1191
Score = 34.3 bits (75), Expect = 0.067
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 101 CSHYHMCV-SGKTLSLACPSNLFYDPQKERCDFPANVSCEGRVAP 232
C+ ++ C S ++L CP L + K+ CD+P V C P
Sbjct: 582 CAQFYFCYGSAESLLSRCPRGLLWSVVKKTCDYPHLVDCSRPTTP 626
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 101 CSHYHMC-VSGKTLSLACPSNLFYDPQKERCDFPANVSC 214
CS + C + + +CP L ++ +K CD P NV+C
Sbjct: 1468 CSRLYQCDIFHRAFLKSCPHGLKWNIEKNACDHPVNVNC 1506
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 62 QEGSNGKLVAHNVCSHYHMCVSGKTLSL-ACPSNLFYDPQKERCDFPANVSCE 217
+E NG CS ++ C + L CP+ L + +K CD+P V C+
Sbjct: 1239 KEKPNGHYADPRDCSRFYQCDAFHRAFLHRCPAGLKWSVKKTACDWPRYVDCD 1291
Score = 31.5 bits (68), Expect = 0.47
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 74 NGKLVAHNVCSHYHMCVSGKTLSL-ACPSNLFYDPQKERCDFPANVSCE 217
NG CS ++ C + L CP+ L + +K CD+P V C+
Sbjct: 893 NGHYADPRDCSKFYQCDAFHRAFLHRCPAGLKWSVKKTACDWPRYVDCD 941
Score = 31.1 bits (67), Expect = 0.63
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 74 NGKLVAHNVCSHYHMCVSGKTLSL-ACPSNLFYDPQKERCDFPANVSCE 217
NG CS ++ C + L CP+ L + +K CD+P V C+
Sbjct: 998 NGHYADPMDCSRFYQCDAFHRAFLHRCPAGLKWSVKKTTCDWPRYVDCD 1046
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +2
Query: 74 NGKLVAHNVCSHYHMCVSGKTLSL-ACPSNLFYDPQKERCDFPANVSCE 217
NG CS ++ C + L C L + K CD+P NV C+
Sbjct: 788 NGYYADPRDCSRFYQCDAFHRAFLHRCSPGLKWSITKTTCDWPRNVDCD 836
>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
Length = 339
Score = 34.7 bits (76), Expect = 0.051
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 101 CSHYHMCVS-GKTLSLACPSNLFYDPQKERCDFPANVSCEGRVAPVFLPPLNKHL 262
CS ++ C + K +CPS L + K CD+P V C+ + + PP +L
Sbjct: 129 CSRFYQCDAFHKAFLHSCPSGLKWSVTKTTCDWPRYVDCD--IGGAYKPPFRCNL 181
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +2
Query: 101 CSHYHMCVS-GKTLSLACPSNLFYDPQKERCDFPANVSCE 217
CS Y+ C KT C L + K CD A+V C+
Sbjct: 36 CSKYYQCDDFHKTHHRTCSEQLKWSAVKNICDHAADVDCD 75
>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
Length = 220
Score = 34.7 bits (76), Expect = 0.051
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 101 CSHYHMCVS-GKTLSLACPSNLFYDPQKERCDFPANVSCEGRVAPVFLPPLNKHL 262
CS ++ C + K +CPS L + K CD+P V C+ + + PP +L
Sbjct: 36 CSRFYQCDAFHKAFLHSCPSGLKWSVTKTTCDWPRYVDCD--IGGAYKPPFRCNL 88
>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 33.9 bits (74), Expect = 0.089
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 92 HNVCSHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVSC 214
++ C + C + CP L Y+ + ++CD+P NV C
Sbjct: 88 YDACRGFIHCHNYNASYKPCPGGLLYNEKTKQCDWPRNVDC 128
>SB_56964| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 908
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 11 NTGPCNCDPKQALSLCAQEGSNGKLVAHNVCSHYHMCVSGKTLSL 145
N G C+ D + + G GK CS+Y+ C +G T L
Sbjct: 200 NGGSCSVDGSGDYNCACRPGFTGKNCETATCSNYNPCYNGGTCGL 244
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +2
Query: 98 VCSHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVSCEGR 223
VC H C +G T + CPS +Y + + + EG+
Sbjct: 30 VCVRGHYCPAGTTREIPCPSGTYYPDEGAKAVGDCRLCDEGK 71
>SB_44060| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)
Length = 64
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +2
Query: 101 CSHYHMCVS-GKTLSLACPSNLFYDPQKERCDFPANVSCE 217
CS Y+ C KT C L + K CD A+V C+
Sbjct: 18 CSKYYQCDDFHKTHHRTCSDQLKWSAVKNICDHAADVDCD 57
>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2532
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 201 LMSAAKAVLHQCSYPHSTNIWKHDKTSDTTFKGLYEKL 314
L + +L+ CS PHS +IW D + F+ + EKL
Sbjct: 1153 LFHESDPILNSCSKPHSLSIWIRD---ELIFQKMKEKL 1187
>SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)
Length = 155
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +2
Query: 101 CSHYHMCVS-GKTLSLACPSNLFYDPQKERCDFPANVSCE 217
CS Y+ C KT C L + K CD A+V C+
Sbjct: 85 CSKYYQCDDFHKTHHRTCSDQLKWSAVKNICDHAADVDCD 124
>SB_58074| Best HMM Match : CBM_14 (HMM E-Value=2.7e-14)
Length = 480
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +2
Query: 44 ALSLCAQEGSNGKLVAHNVCSHYHMCVSGKTLSLACPSNLFYDPQKERCD 193
++S Q+ ++G + C Y C +G + CP+ L ++ + CD
Sbjct: 331 SVSNFCQDKADGNYAHPSKCDMYITCSNGIAHEMPCPAGLNWNDVTKECD 380
>SB_48824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 5 NVNTGPCNCDPKQALSLCAQEG-SNGKLVAHNVCSHYHMCVSGKTLSLACPSNLFYDPQ 178
++N GP + K LC+ E ++ + N YH + S +CPSN P+
Sbjct: 111 SINIGPLSATGKHECQLCSSEHVTHPNDLVPNSHYEYHPVENNVCYSSSCPSNATCKPR 169
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +2
Query: 101 CSHYHMCVSGKTLSLACPSNLFYDP-QKERCDF-PANVSCEGR 223
C+ H C G + + CPS + D QK+ C P C+ +
Sbjct: 266 CTKGHYCPKGTSAPVKCPSGSYQDELQKDSCKVCPEGHFCDNK 308
>SB_41871| Best HMM Match : YabP (HMM E-Value=0.95)
Length = 183
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 24 VTVIRNRHYLYVL--KKVRTANL*PIMCVATITCASAVKHYHSLVR 155
++ IR +H++Y+L +K R I CV T +K SL+R
Sbjct: 89 ISTIRPKHFVYILCRRKARNNLKRLIFCVKISTSHQPIKKAESLIR 134
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,090,060
Number of Sequences: 59808
Number of extensions: 283155
Number of successful extensions: 645
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -