Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25o08
(553 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 46 2e-05
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 42 4e-04
U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical pr... 35 0.045
Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical pr... 34 0.059
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 34 0.059
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 34 0.059
DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin p... 34 0.059
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 33 0.10
Z32840-2|CAD91625.1| 160|Caenorhabditis elegans Hypothetical pr... 32 0.32
Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical pr... 28 5.1
AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotei... 28 5.1
U40060-7|AAA81145.2| 391|Caenorhabditis elegans Hypothetical pr... 27 9.0
AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical ... 27 9.0
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
H02I12.1 protein.
Length = 1319
Score = 45.6 bits (103), Expect = 2e-05
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Frame = +2
Query: 29 CDPKQALSLCAQEG-SNGKLVAH-------NVCSHYHMCVSGKTLSLACPSNLFYDPQKE 184
CD Q +S C G +NG+ H N C ++ CV G+ + + CPS ++P
Sbjct: 1226 CDYPQKVSGCENHGQTNGECSEHGSFIADANNCEVFYRCVWGRKVVMTCPSGTVFNPLLS 1285
Query: 185 RCDFPANV-SCEGRVA 229
CD+P+ V SC G+ +
Sbjct: 1286 VCDWPSAVPSCSGQAS 1301
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 101 CSHYHMCVSGKTLSL-ACPSNLFYDPQKERCDFPANVS-CE 217
CS C G+ +C S+L ++ +CD+P VS CE
Sbjct: 1196 CSAILQCFGGELFEHPSCQSSLAFNQLTGKCDYPQKVSGCE 1236
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 41.5 bits (93), Expect = 4e-04
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +2
Query: 89 AHNVC-SHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANV-SCEG 220
A +C S +++C +G+ ++ CP+NL ++P CD+ NV C+G
Sbjct: 583 ASGLCKSVFYICANGQVVATTCPANLIFNPYVGECDYSTNVRDCQG 628
Score = 35.5 bits (78), Expect = 0.026
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +2
Query: 38 KQALSL-CAQEGSNGKLVAHNVCS-HYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVS 211
++A+S+ C S + VC+ +Y+ C +G + CP Y P +RCD+ N +
Sbjct: 105 QKAVSINCVGRLSGDYALDKTVCNENYYQCANGISYMRKCPYQQVYVPILKRCDYHTNCN 164
Query: 212 CEGRV 226
G V
Sbjct: 165 ASGGV 169
Score = 35.5 bits (78), Expect = 0.026
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 101 CSHYHM-CVSGKTLSLACPSNLFYDPQKERCDFPANVSCEGRVAPVFLPPLNKHLEARQN 277
C Y + C + KT CPS L+Y +++CD NV EG P + P + A Q
Sbjct: 701 CEKYLIKCYNRKTFKFPCPSGLYYSRLQDKCDVKENV--EG--CPEYKPTTDATPAAEQP 756
Query: 278 IRHY 289
+ Y
Sbjct: 757 VISY 760
Score = 33.5 bits (73), Expect = 0.10
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 101 CSHYH-MCVSGKTLSLACPSNLFYDPQKERCDFPANV 208
CS Y C +GK CP L Y + CDFP +V
Sbjct: 217 CSPYFWQCSNGKLFRKTCPEKLIYVLDQNLCDFPESV 253
Score = 32.7 bits (71), Expect = 0.18
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 104 SHYHMCVSGKTLSLACPSNLFYDPQKERCDFP 199
S+Y C+ + ++CP++L + + E+C FP
Sbjct: 969 SYYFSCIDEQIRKMSCPNSLKFSKESEKCVFP 1000
Score = 31.5 bits (68), Expect = 0.42
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +2
Query: 74 NGKLVAHNVCSHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVSCE 217
NGK + + C G+ + CP +L ++ CDF N CE
Sbjct: 438 NGKYIKEACTKSFFTCHDGRAFANDCPGDLVFNKATGTCDFAEN--CE 483
Score = 31.1 bits (67), Expect = 0.55
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 101 CSHYHM-CVSGKTLSLACPSNLFYDPQKERCDFPANV 208
C Y++ C + +T CP+ LFY RCD+ +V
Sbjct: 800 CEDYYISCNNFETTINRCPAGLFYSKLNNRCDYKEHV 836
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 71 SNGKLVAHNVCS-HYHMCVSGKTLSLACPSNLFYDPQKERCDFPA-NVSCEGRVAP 232
SNG L +CS HY +C +G+ S C + L Y+ + C++ + N C P
Sbjct: 1028 SNG-LHHLKMCSPHYIVCDNGRAFSGTCIAPLVYNGDTQTCNYKSTNKDCGNDYIP 1082
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 83 LVAHNVCSHYHMCVSGKTLSLACPSNLFYDPQKERCD 193
L A S Y CV+ +CP L++D RC+
Sbjct: 49 LYAVGCSSKYLQCVNNVEYEQSCPEGLYFDRLLARCE 85
>U00055-4|AAA50720.2| 431|Caenorhabditis elegans Hypothetical
protein R02F2.4 protein.
Length = 431
Score = 34.7 bits (76), Expect = 0.045
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 56 CAQEGSNGKLVAHNVCSHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANV 208
C +G+ K NV + C G CP+NL ++P CD+P NV
Sbjct: 179 CESDGNISKSECSNV---FFSCSEGIAHRRNCPANLVFNPAISSCDWPKNV 226
Score = 31.1 bits (67), Expect = 0.55
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 119 CVSGKTLSLACPSNLFYDPQKERCDFPANV 208
CVSG+ + CP +L Y E CD+ NV
Sbjct: 45 CVSGEARYMDCPEDLVYHKNLEFCDWRHNV 74
Score = 31.1 bits (67), Expect = 0.55
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 104 SHYHMCVSGKTLSLACPSNLFYDPQKERCDF 196
S Y +C SG L+C + L YDP ++C +
Sbjct: 134 SSYIICNSGSPRFLSCSTPLIYDPTNKKCSW 164
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 104 SHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANV 208
S + C +G + + CP L + + + CD+ NV
Sbjct: 253 SSFSACTNGIPIVMFCPDGLMFSEKNQMCDYEWNV 287
>Z32840-1|CAA83679.1| 584|Caenorhabditis elegans Hypothetical
protein C07G2.1a protein.
Length = 584
Score = 34.3 bits (75), Expect = 0.059
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 101 CS-HYHMCVSGKTLSLACPSNLFYDPQKERCDFPANV 208
CS HY C +G + + CP+ L +D + CD+ NV
Sbjct: 227 CSDHYTACSNGYLIPMQCPARLAFDEARVICDYVMNV 263
Score = 34.3 bits (75), Expect = 0.059
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 101 CS-HYHMCVSGKTLSLACPSNLFYDPQKERC 190
CS HY CV+G+ C + LF+ P++ RC
Sbjct: 537 CSQHYKNCVNGQEAIFICENGLFFSPEQARC 567
Score = 31.9 bits (69), Expect = 0.32
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 83 LVAHNVCS-HYHMCVSGKTLSLACPSNLFYDPQKERCDFPANV-SCEG 220
L A CS + C G + + CP++L YDP+ C++ NV C G
Sbjct: 68 LYAIGGCSPQFLTCSGGISRIMDCPADLIYDPRIVACEYSYNVPQCGG 115
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.059
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 104 SHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVS 211
S + C +G+ + + CP+ L + RCD+ +NVS
Sbjct: 322 SSFTACTNGRAIVMFCPAGLKFSESTVRCDYESNVS 357
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 65 EGSNGKLVAHNVCS-HYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVS-CEGRVAP 232
EG + + VCS ++ C G + CP++L ++P CD+P +V+ C G P
Sbjct: 248 EGKADGIHPNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAECAGLPTP 305
Score = 31.9 bits (69), Expect = 0.32
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 104 SHYHMCVSGKTLSLACPSNLFYDPQKERC 190
++Y C + L+CP+ LFYD ++C
Sbjct: 153 TYYFFCTTNTARFLSCPTPLFYDADSQKC 181
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 119 CVSGKTLSLACPSNLFYDPQKERCDFPANV-SCEG 220
C G + CP++L Y+ CD+ NV CEG
Sbjct: 44 CSGGIARIMDCPADLIYNEPLLICDWRHNVIGCEG 78
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 119 CVSGKTLSLACPSNLFYDPQKERCDFP 199
C +G CPS+L ++ Q CD+P
Sbjct: 422 CQNGHVDIFECPSSLVFNDQSLICDYP 448
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.059
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 104 SHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVS 211
S + C +G+ + + CP+ L + RCD+ +NVS
Sbjct: 322 SSFTACTNGRAIVMFCPAGLKFSESTVRCDYESNVS 357
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 65 EGSNGKLVAHNVCS-HYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVS-CEGRVAP 232
EG + + VCS ++ C G + CP++L ++P CD+P +V+ C G P
Sbjct: 248 EGKADGIHPNGVCSTNFLTCSGGIARIMDCPASLVFNPTILVCDWPRDVAECAGLPTP 305
Score = 31.9 bits (69), Expect = 0.32
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 104 SHYHMCVSGKTLSLACPSNLFYDPQKERC 190
++Y C + L+CP+ LFYD ++C
Sbjct: 153 TYYFFCTTNTARFLSCPTPLFYDADSQKC 181
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 119 CVSGKTLSLACPSNLFYDPQKERCDFPANV-SCEG 220
C G + CP++L Y+ CD+ NV CEG
Sbjct: 44 CSGGIARIMDCPADLIYNEPLLICDWRHNVIGCEG 78
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 119 CVSGKTLSLACPSNLFYDPQKERCDFP 199
C +G CPS+L ++ Q CD+P
Sbjct: 422 CQNGHVDIFECPSSLVFNDQSLICDYP 448
>DQ340623-1|ABC65811.1| 584|Caenorhabditis elegans chondroitin
proteoglycan-1 protein.
Length = 584
Score = 34.3 bits (75), Expect = 0.059
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 101 CS-HYHMCVSGKTLSLACPSNLFYDPQKERCDFPANV 208
CS HY C +G + + CP+ L +D + CD+ NV
Sbjct: 227 CSDHYTACSNGYLIPMQCPARLAFDEARVICDYVMNV 263
Score = 34.3 bits (75), Expect = 0.059
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 101 CS-HYHMCVSGKTLSLACPSNLFYDPQKERC 190
CS HY CV+G+ C + LF+ P++ RC
Sbjct: 537 CSQHYKNCVNGQEAIFICENGLFFSPEQARC 567
Score = 31.9 bits (69), Expect = 0.32
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 83 LVAHNVCS-HYHMCVSGKTLSLACPSNLFYDPQKERCDFPANV-SCEG 220
L A CS + C G + + CP++L YDP+ C++ NV C G
Sbjct: 68 LYAIGGCSPQFLTCSGGISRIMDCPADLIYDPRIVACEYSYNVPQCGG 115
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 33.5 bits (73), Expect = 0.10
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 71 SNGKLVAHNVCSHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVSC 214
S+G N C + +C+S K+ S++CPS L Y + C C
Sbjct: 485 SDGFYPNSNNCGLFVLCLSSKSYSMSCPSGLQYSASLKYCTTSTASGC 532
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 101 CSHYHMCVSGKTLSLACPSNLFYDPQKERCDFPANVSC 214
C + CV+G + + CP+ L + CD P C
Sbjct: 578 CLKFIRCVNGISYNFECPNGLSFHADTMMCDRPDPSKC 615
>Z32840-2|CAD91625.1| 160|Caenorhabditis elegans Hypothetical
protein C07G2.1b protein.
Length = 160
Score = 31.9 bits (69), Expect = 0.32
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 83 LVAHNVCS-HYHMCVSGKTLSLACPSNLFYDPQKERCDFPANV-SCEG 220
L A CS + C G + + CP++L YDP+ C++ NV C G
Sbjct: 68 LYAIGGCSPQFLTCSGGISRIMDCPADLIYDPRIVACEYSYNVPQCGG 115
>Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical protein
F22E10.3 protein.
Length = 1327
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 258 IWKHDKTSDTTFKGLYEKLLG 320
I++ DK+SD TFKG+ +LG
Sbjct: 1017 IYQGDKSSDDTFKGIIAMMLG 1037
>AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotein
related (146.8 kD)(pgp-14) protein.
Length = 1327
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 258 IWKHDKTSDTTFKGLYEKLLG 320
I++ DK+SD TFKG+ +LG
Sbjct: 1017 IYQGDKSSDDTFKGIIAMMLG 1037
>U40060-7|AAA81145.2| 391|Caenorhabditis elegans Hypothetical
protein F38B6.7 protein.
Length = 391
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 29 CDPKQALSLCAQEGSNGKLVAHNVCSHYHMCVSGKTLSLACPSNLFYD 172
CDP + + C + + + V H + + Y+M + KT +L N+FY+
Sbjct: 136 CDPTED-NACPEHFTCEQAVNHQMLTTYNMHLCCKTSTLDSFENVFYE 182
>AF003135-8|AAK18984.1| 235|Caenorhabditis elegans Hypothetical
protein W03F11.1 protein.
Length = 235
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = +2
Query: 101 CSHYHMCVSGKTLSLACPSNLFYDPQKERCD 193
C +++ C SG +C +D K CD
Sbjct: 172 CKNFYQCASGLWTQRSCGEGTIWDQHKLTCD 202
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,362,476
Number of Sequences: 27780
Number of extensions: 225590
Number of successful extensions: 627
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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