Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25o08
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   3.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   4.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   4.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.3  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 432 LHRLKNFVKYLTVLPTI*YL*TNEMQHNFNLK 337
           LH++KN + Y  VL    +  T ++ H+  L+
Sbjct: 281 LHKMKNIIDYYLVLENTDH--TKQLSHDVLLR 310


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
 Frame = +2

Query: 224 VAPVFLP-----PLNKHLEARQNIRHYF 292
           +AP FL      P  KH+E  + IR+Y+
Sbjct: 367 IAPYFLDYNYTIPKEKHVEVARLIRNYY 394


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
 Frame = +2

Query: 224 VAPVFLP-----PLNKHLEARQNIRHYF 292
           +AP FL      P  KH+E  + IR+Y+
Sbjct: 367 IAPYFLDYNYTIPKEKHVEVARLIRNYY 394


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 132 KHYHSLVRLIFSMIL 176
           KH+H  + +I+SM+L
Sbjct: 54  KHFHIGLAIIYSMLL 68


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 132 KHYHSLVRLIFSMIL 176
           KH+H  + +I+SM+L
Sbjct: 54  KHFHIGLAIIYSMLL 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,014
Number of Sequences: 438
Number of extensions: 2466
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)