Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25o06
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.72 
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    28   1.3  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    28   1.7  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    27   2.9  
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    27   3.9  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    27   3.9  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 16/74 (21%), Positives = 32/74 (43%)
 Frame = +1

Query: 463  EDRLIEYIDQQHEHFIDPCVVENAKYLAPQLPGYSTQFLQETLEKYTYPRGTEWEKMIKE 642
            + R +  ++   EH ++  + EN K     + G+  +     LE +  PR      M KE
Sbjct: 1382 QHRRLNLVNNHKEHVLERAMSENNKMDNEAMDGFLDKLRNVKLESHHKPRNRSAITMGKE 1441

Query: 643  GIFPQPDETEWANP 684
             +   P+ +  ++P
Sbjct: 1442 HLIEAPNTSTKSSP 1455


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 644 EFSLNPTKPNGRTLKLRNKINLFIN 718
           E  +NP  PN   L L+NK+  FIN
Sbjct: 443 ELEINPEGPNYINLDLKNKVRPFIN 467


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -1

Query: 263 LKSTRLAHISPVATPIP*GFRASEIVACPKTSSG---EVGSSIHIGFKGANF 117
           L S+ L H++     +P GF+A EI+  P  +     E+  S+H+   G  F
Sbjct: 478 LVSSELLHMTTFTQSLPSGFKAYEIIPEPNVTGNALIELQESLHLDSYGFFF 529


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 142 WIEEPTSPDDVLGHATISEALKPYGIGVATGE 237
           W + P  P      +T  +ALKPY +GVAT E
Sbjct: 500 WFKGPLRPVS----STTLQALKPYNLGVATVE 527


>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 563 TAHSSCKRLSKSIRIHVERNGKR*SKKEFSLNPTKPNG 676
           T  + C    K   + +E N K   + EFS++PT P G
Sbjct: 75  TVFAGCVGQDKFADMLLESNEKAGLRSEFSVDPTTPTG 112


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = -3

Query: 420 LHHLTQTNSSGVWTYFYSKFFSH----KIHR*YFID 325
           LHHLT     G+W++   K  +     K HR Y +D
Sbjct: 449 LHHLTVAKEKGIWSFRQPKRQNEMPRLKTHRDYVLD 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,517,375
Number of Sequences: 5004
Number of extensions: 80021
Number of successful extensions: 247
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)