Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25o06
(761 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207... 40 0.003
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 33 0.25
03_04_0204 - 18444903-18445054,18445445-18445676,18445765-184458... 29 3.1
02_05_1158 - 34550049-34551241,34551354-34551521,34551847-345522... 29 4.0
10_08_0102 + 14810293-14811345,14811989-14812108,14812745-148127... 28 9.3
10_07_0098 - 12844631-12845074,12845329-12846570 28 9.3
01_06_0278 - 28111655-28112531,28113896-28114029,28114131-281149... 28 9.3
>01_01_0254 -
2074095-2074100,2074389-2074462,2074572-2074633,
2074790-2075123,2075271-2075487,2075575-2075685,
2076304-2076840
Length = 446
Score = 39.5 bits (88), Expect = 0.003
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Frame = +1
Query: 64 MVDANQAWSVGQAIEWMKKLAPL--KPMWIEEPTSPDDVLGHATIS-EALKPYGIGVATG 234
++DAN+ ++ QAIE + +L + P+ E+P DD G +S A + Y + VA
Sbjct: 268 ILDANEGYTANQAIEALDRLNEMGVTPVLFEQPVHRDDWEGLRDVSIVAKEKYRVAVAAD 327
Query: 235 EMCANRVLFKQFLQSGGMQY-CQIDAARIGGVNEILAVYLMAEKLRV 372
E C + +L Q + G + + I A++ G+ L V A K R+
Sbjct: 328 ESCRS-LLDAQKIMDGNLAHVINIKLAKL-GILGALEVIDAARKARI 372
>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 31 VRRYIGDENVLMVDANQAWSVGQAIEWMKKLAPLKPMWIEEPT-SPDDVL 177
VR +G + + DAN+ W+ QAI++ ++ L +IEEP S +D++
Sbjct: 1238 VREIVGYKINIRADANRKWTYEQAIDFGSRVKGLCLQYIEEPVDSVNDII 1287
>03_04_0204 -
18444903-18445054,18445445-18445676,18445765-18445836,
18446201-18446347,18446559-18446614,18446727-18446832,
18446938-18447025,18447112-18447230,18448975-18449580,
18449803-18449898,18450232-18450422,18453287-18453416,
18453531-18453566
Length = 676
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/50 (20%), Positives = 26/50 (52%)
Frame = +3
Query: 534 EIFSTSITRIQHTVPARDSRKVYVSTWNGMGKDDQRRNFPSTRRNRMGEP 683
++ ++T + ++ AR + + +S W + K+ + ++FP T +P
Sbjct: 307 QLVQGAVTSVTGSMAARPTLQTNISPWQQVNKEQKTKSFPPTEHTNKIQP 356
>02_05_1158 -
34550049-34551241,34551354-34551521,34551847-34552231,
34552245-34552772
Length = 757
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 121 LAPLKPMWIEEPTSPDDVLGHATISEALKPYGIGVATGEMCANRVLFK 264
LAP+ P W ++P D G+ +I PY G+ G CA F+
Sbjct: 20 LAPVAPAWAQQPAGCPDKCGNTSI-----PYPFGI--GSRCARDFNFR 60
>10_08_0102 +
14810293-14811345,14811989-14812108,14812745-14812792,
14812886-14813006,14814073-14814129,14815109-14815217,
14815298-14815523,14815608-14815724,14816041-14816119,
14816303-14816325,14816698-14816742,14816872-14817030
Length = 718
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 717 FMKRFILFRSLRVRPFGFVGLR-ENSFFDH 631
F+KR L RS R+RP GF +R + S DH
Sbjct: 120 FVKRDDLARSKRIRPDGFFTIRCDVSLIDH 149
>10_07_0098 - 12844631-12845074,12845329-12846570
Length = 561
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 28 AVRRYIGDENVLMVDANQAWSVGQAIEWMKKLAPLKPMWI 147
++R Y D +V+ + VG A+E++ K + P+W+
Sbjct: 381 SIRNYYHDNHVIQDMLVPLYKVGDALEFVHKEMEVYPLWL 420
>01_06_0278 -
28111655-28112531,28113896-28114029,28114131-28114992,
28115636-28115735,28115848-28115939,28116031-28116122
Length = 718
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 121 LAPLKPMWIEEPTSPDDVLGHATISEALKPYGIGVATGEMCANR 252
L + P W + T PD V G A ++ ++ +GV TG A R
Sbjct: 352 LRKINPDWKLDVTVPDYVEGTANLASSMYNQALGVPTGSHGAFR 395
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,614,583
Number of Sequences: 37544
Number of extensions: 514807
Number of successful extensions: 1329
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -