Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25n08
(186 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 0.75
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 1.3
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 25 1.3
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 1.7
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 24 2.3
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 24 2.3
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 24 3.0
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 23 4.0
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 23 4.0
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 23 5.3
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 23 7.0
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 23 7.0
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 23 7.0
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 22 9.3
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 22 9.3
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 22 9.3
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 22 9.3
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 22 9.3
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.8 bits (54), Expect = 0.75
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 116 RTLTILLKTQKMNTQHQPAI 175
RT TI+ KT+ ++ HQPA+
Sbjct: 135 RTETIVKKTEHADSNHQPAV 154
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 1.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 92 LFSLIWQNRTLTILLKTQKMNTQHQPAIQKK 184
L LI QNR+L+ +KT K + P+I +
Sbjct: 1082 LQDLIRQNRSLSRQIKTDKESNSRSPSISSQ 1112
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 25.0 bits (52), Expect = 1.3
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 43 VYEYIPTRTSIHVGIYFIFFNM--AEPNPDNIVKNTENEYSTPASDP 177
V E +P S + G F F AE P+N ++ EN + PAS P
Sbjct: 265 VREPVPVPKS-NSGFRFPFMRNKPAEQAPENPFRDPENPFKDPASAP 310
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 24.6 bits (51), Expect = 1.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 36 LVCLRVYSDTYEHSRWNIFY 95
++CL VYSD Y + R +IF+
Sbjct: 77 VICL-VYSDNYSYERVSIFW 95
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 24.2 bits (50), Expect = 2.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 127 NIVKNTENEYSTPASDPKK 183
N++ N E++YS ++ PKK
Sbjct: 256 NLISNLESKYSKSSTKPKK 274
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 24.2 bits (50), Expect = 2.3
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 182 FFGSLAGVEYSFSVFLT 132
FF S A VEY S+FLT
Sbjct: 262 FFSSCASVEYFNSLFLT 278
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 23.8 bits (49), Expect = 3.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 99 ENKIYSNVNARTCRNILVNKLVVVVT 22
E+ +++NV R C NI+V+ LV + T
Sbjct: 187 EDALFNNV-FRPCSNIIVSVLVFIFT 211
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 23.4 bits (48), Expect = 4.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 38 SLFTSIFRHVRAFTLEYILFSLIWQNRTLT 127
S F SIF H A Y+L I+ N+ +T
Sbjct: 136 SCFASIFFHAIACYALYLLTKSIFSNQKMT 165
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 23.4 bits (48), Expect = 4.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 136 KNTENEYSTPASDPKKK 186
+ E+++ST ASD KKK
Sbjct: 327 RKVEDDHSTTASDQKKK 343
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 23.0 bits (47), Expect = 5.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 1 DTYTCNSCNHNH*FVYEYIP 60
D+Y C SC + F Y+P
Sbjct: 1166 DSYECRSCQNRTRFSQVYLP 1185
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 22.6 bits (46), Expect = 7.0
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = +3
Query: 33 PLVCLRVYSDTYEHSRWNIFY 95
P V +YSDT RW Y
Sbjct: 439 PDVLYNLYSDTQHLMRWGFMY 459
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 22.6 bits (46), Expect = 7.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 97 FFNMAEPNPDNIVKNTENEYST 162
F N+ + + I +N ENEY T
Sbjct: 6 FTNLGNLDTEAIYENKENEYQT 27
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 22.6 bits (46), Expect = 7.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 20 AVTTTTSLFTSIFRHVRAFTLEYILFSLIWQNRTLTI 130
AV + L+ RH+ A+T Y L+ Q R L +
Sbjct: 811 AVFEKSQLYPFTIRHLGAYTASYTLYVESLQLRKLWV 847
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 22.2 bits (45), Expect = 9.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 185 FFFGSLAGVEYSFSVFLTILSGFGSAILKKIKYIP 81
F FG AG S + FL+ +SG + L+ + ++P
Sbjct: 196 FDFGD-AGKSTSDAEFLSDISGIPKSDLRALMFVP 229
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 76 ECSYVSEYTRKQTSGCG 26
E SYV E+T +++SG G
Sbjct: 68 EMSYVGEWTVEESSGPG 84
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 22.2 bits (45), Expect = 9.3
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -3
Query: 112 LPY*RK*NIFQRECSYVSEY 53
+P+ R I+++ C Y S+Y
Sbjct: 676 VPFPRPGEIYEKRCDYFSKY 695
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 22.2 bits (45), Expect = 9.3
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +1
Query: 1 DTYTCNSCNHNH*F 42
+ Y CN C HN F
Sbjct: 133 ELYQCNVCGHNQRF 146
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 14 AIAVTTTTSLFTSIFRHVRAFTLEYILF 97
A+ +T L + R+++ FT+ YIL+
Sbjct: 137 ALGMTVLGYLSLAFSRNIQMFTVAYILY 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 831,729
Number of Sequences: 5004
Number of extensions: 13908
Number of successful extensions: 49
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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