Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25n06
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    26   0.39 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 9/42 (21%), Positives = 23/42 (54%)
 Frame = +2

Query: 137 VDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKL 262
           VD+ K   ++L  +   +  + CD+  + D ++++ W++  L
Sbjct: 41  VDKMKTLVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNL 82


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
          protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 43 FSCLSSTLFSEFQTSFCK 96
          F CL+ST+ SE   + CK
Sbjct: 15 FLCLASTILSESAGTSCK 32


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
 Frame = +2

Query: 542 YKGTGAELPVNLKFIFECMEESGSEGLDSLL---MDKLKPEG 658
           Y   GA+ P N  FI     +S S     L+   M  + P G
Sbjct: 297 YYDYGADFPFNFAFIKNVSRDSNSSDFKKLIDNWMTYMPPSG 338


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
 Frame = +2

Query: 542 YKGTGAELPVNLKFIFECMEESGSEGLDSLL---MDKLKPEG 658
           Y   GA+ P N  FI     +S S     L+   M  + P G
Sbjct: 297 YYDYGADFPFNFAFIKNVSRDSNSSDFKKLVDNWMTYMPPSG 338


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 622 KPFGTRFLHTFENELQIDRQLST 554
           KPF  R  H    +L +DR + T
Sbjct: 105 KPFQIRMKHGLIRDLIVDRDVPT 127


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 542 YKGTGAELPVNLKFIFECMEESGSEGLDSLLMDKLK 649
           Y   G+ +P N KFI +    S  E    ++ + +K
Sbjct: 310 YYEVGSNVPFNFKFITDANSSSTPEQFKVIIDNWIK 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,437
Number of Sequences: 438
Number of extensions: 4079
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)