Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25n04
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces pombe...    41   2e-04
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   4.6  
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    26   6.0  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   8.0  

>SPBC21D10.07 |||UPF0287 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 104

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +2

Query: 119 LSPHLHTD---ECNIFIKKLVDCHLNHPFRKFIGYCNDYDRDMRKCLKAERLQRQKANLD 289
           + PHL  +   +C   I+ L +CH +  F KF G CN    +++ CL  +R  + + N +
Sbjct: 1   MHPHLDVNNQKQCADLIRALEECHKS--FGKFFGECNTIKYELKACLTKDRNDKARLNRE 58

Query: 290 ESRQR 304
            +R R
Sbjct: 59  NARMR 63


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 158 IKKLVDCHLNHPFRKFIGYCNDYDRDMRKCLKAERLQRQK 277
           ++  +D  ++HP+ K  GY +   RD R   KAE   R++
Sbjct: 266 LRPSIDQIISHPYFKENGYHSSSIRDPRPSSKAEEKVRKR 305


>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 415 LDSIPDLDNLK-TFTERYFSKRYLINVDGIKNNDMMIMFHSNRIALLSLAPSHSFFSKD- 588
           L S P +D  K +  +RY     L  +D ++   +++ +    IA+  + P H +  +D 
Sbjct: 62  LVSHPSIDKGKLSILKRYKMSHRLTAIDKLRPLTVLVAWKQLNIAMRPIFPQHRYTEQDK 121

Query: 589 ENYK 600
           +N+K
Sbjct: 122 KNWK 125


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 224 YDRDMRKCLKAERLQRQKANL 286
           YDR +R C+KA   Q+Q+ ++
Sbjct: 718 YDRLIRNCIKAHNKQQQRRSI 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,406
Number of Sequences: 5004
Number of extensions: 53329
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)