Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt25n02
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 274 4e-74
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 162 2e-40
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 105 2e-23
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 93 2e-19
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 93 2e-19
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 73 2e-13
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 70 1e-12
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 66 3e-11
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 66 3e-11
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 60 1e-09
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 60 1e-09
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 60 1e-09
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 59 3e-09
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 59 3e-09
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 59 3e-09
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 58 5e-09
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 55 4e-08
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 55 4e-08
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 52 5e-07
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 52 5e-07
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 50 2e-06
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 49 4e-06
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 48 8e-06
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 38 0.007
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 31 0.78
Z81069-5|CAB02995.1| 504|Caenorhabditis elegans Hypothetical pr... 30 1.8
U56964-7|AAB54034.1| 382|Caenorhabditis elegans Hypothetical pr... 30 1.8
U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnorm... 29 3.2
U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnorm... 29 3.2
AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor ... 29 3.2
AC006830-1|AAK68610.3| 802|Caenorhabditis elegans Hypothetical ... 29 4.2
U80843-11|AAB37970.1| 296|Caenorhabditis elegans Hypothetical p... 28 5.5
Z80223-5|CAB02321.1| 153|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical pr... 27 9.6
L11247-1|AAA28010.2| 484|Caenorhabditis elegans Hypothetical pr... 27 9.6
AF025463-2|AAB71006.1| 387|Caenorhabditis elegans Serpentine re... 27 9.6
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 274 bits (672), Expect = 4e-74
Identities = 128/166 (77%), Positives = 143/166 (86%)
Frame = +2
Query: 194 KPLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGI 373
+P+E IRNIGISAHIDSGKTT+TERIL+Y GRID MHEV+GKD+VGA MD M+LERQRGI
Sbjct: 39 RPIERIRNIGISAHIDSGKTTVTERILYYAGRIDSMHEVRGKDDVGATMDFMDLERQRGI 98
Query: 374 TIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNR 553
TIQSAATY W NINIIDTPGHVDFTVEVERALRVLDGA+LVLC VGGVQSQT TVNR
Sbjct: 99 TIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGGVQSQTFTVNR 158
Query: 554 QMKRYNVPCLAFINKLDRLGANPERVLKQMRSKLKHNAAFIHLPIG 691
Q+ RYNVP + F+NK+DR GA P + L +R+KL HNAA IHLPIG
Sbjct: 159 QLARYNVPFICFVNKMDRNGATPLKALDGLRNKLNHNAALIHLPIG 204
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 162 bits (394), Expect = 2e-40
Identities = 80/160 (50%), Positives = 107/160 (66%)
Frame = +2
Query: 209 IRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQSA 388
+RNIG+ AH+D+GKTT+TER+L+ G I H D V D +++ER+RGIT+QSA
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAI---HVAGHVDKGNTVTDFLDIERERGITVQSA 81
Query: 389 ATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRY 568
A WK H IN+IDTPGHVDF VEVER +RVLDG ++V+ GVQ QTLTV RQ ++
Sbjct: 82 AVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAGVQPQTLTVWRQSSKF 141
Query: 569 NVPCLAFINKLDRLGANPERVLKQMRSKLKHNAAFIHLPI 688
+P FINK+D+L AN E + + KL A + +P+
Sbjct: 142 KLPAHFFINKMDKLAANFENSVDSVEQKLGVRAVKLVVPL 181
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 105 bits (253), Expect = 2e-23
Identities = 58/163 (35%), Positives = 96/163 (58%)
Frame = +2
Query: 176 VKYAEHKPLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMEL 355
V +E P + IRN GI AH+D GK+TL +R+L G + + ++D +++
Sbjct: 32 VNLSEFTP-DKIRNFGIVAHVDHGKSTLADRLLEMCGAVPPGQK--------QMLDKLQV 82
Query: 356 ERQRGITIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQ 535
ER+RGIT+++ + + +N+IDTPGHVDF+ EV R+L V DG +L++ + GVQ+Q
Sbjct: 83 ERERGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQGVQAQ 142
Query: 536 TLTVNRQMKRYNVPCLAFINKLDRLGANPERVLKQMRSKLKHN 664
T+ N+ + INK+D GA+ + V Q+++ + N
Sbjct: 143 TIANFWLAFEKNIQIIPVINKIDLPGADIKSVETQLKNLFEFN 185
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 92.7 bits (220), Expect = 2e-19
Identities = 56/142 (39%), Positives = 84/142 (59%)
Frame = +2
Query: 185 AEHKPLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQ 364
A KP E+IRN+ + AH+D GKT+ + ++ I + GK MDS E E+
Sbjct: 12 AATKPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISS--RMAGKLRY---MDSREDEQT 66
Query: 365 RGITIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLT 544
RGIT++S+ + + IN+ID+PGHVDF+ EV AL + D A+L++ + G+ SQT
Sbjct: 67 RGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEA 126
Query: 545 VNRQMKRYNVPCLAFINKLDRL 610
+ RQ+ R + INK+DRL
Sbjct: 127 LIRQVIRNGQAMILVINKIDRL 148
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 92.7 bits (220), Expect = 2e-19
Identities = 56/142 (39%), Positives = 84/142 (59%)
Frame = +2
Query: 185 AEHKPLENIRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQ 364
A KP E+IRN+ + AH+D GKT+ + ++ I + GK MDS E E+
Sbjct: 12 AATKPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISS--RMAGKLRY---MDSREDEQT 66
Query: 365 RGITIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLT 544
RGIT++S+ + + IN+ID+PGHVDF+ EV AL + D A+L++ + G+ SQT
Sbjct: 67 RGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEA 126
Query: 545 VNRQMKRYNVPCLAFINKLDRL 610
+ RQ+ R + INK+DRL
Sbjct: 127 LIRQVIRNGQAMILVINKIDRL 148
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 72.9 bits (171), Expect = 2e-13
Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 23/157 (14%)
Frame = +2
Query: 206 NIRNIGISAHIDSGKTTLTERILFYTGRI----------------DQMHEVKGKDNVGAV 337
NIRN+ + AH+D GK+TLT+ ++ G I +Q + K ++
Sbjct: 18 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISL 77
Query: 338 ---MDSMELERQRGI----TIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGA 496
++ +LE +G T++ + IN+ID+PGHVDF+ EV ALRV DGA
Sbjct: 78 FFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGA 137
Query: 497 ILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDR 607
++V+ V GV QT TV RQ + + F+NK+DR
Sbjct: 138 LVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDR 174
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 70.1 bits (164), Expect = 1e-12
Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 23/157 (14%)
Frame = +2
Query: 206 NIRNIGISAHIDSGKTTLTERILFYTGRI----------------DQMHEVKGKDNVGAV 337
NIRN+ + AH+D GK+TLT+ ++ G I +Q + K ++
Sbjct: 18 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAISL 77
Query: 338 ---MDSMELERQRGI----TIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGA 496
++ +LE +G T++ + IN+ID+PGHVDF+ EV AL V DGA
Sbjct: 78 FFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGA 137
Query: 497 ILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDR 607
++V+ V GV QT TV RQ + + F+NK+DR
Sbjct: 138 LVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDR 174
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 65.7 bits (153), Expect = 3e-11
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Frame = +2
Query: 209 IRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQSA 388
+RN+ I+ H+ GKTT + ++ T + +D D + +E+QRG +I+S
Sbjct: 132 MRNVAIAGHLHHGKTTFLDCLMEQT----HPEFYRAEDADARFTDILFIEKQRGCSIKSQ 187
Query: 389 ATYTIW-----KEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNR 553
+ K + +NIIDTPGHV+F+ E+ + R+ DG ++++ + GV T R
Sbjct: 188 PVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERAIR 247
Query: 554 QMKRYNVPCLAFINKLDRL 610
+ + I+K+DRL
Sbjct: 248 HAIQERLAVTLCISKIDRL 266
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 65.7 bits (153), Expect = 3e-11
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Frame = +2
Query: 209 IRNIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQSA 388
+RN+ I+ H+ GKTT + ++ T + +D D + +E+QRG +I+S
Sbjct: 7 MRNVAIAGHLHHGKTTFLDCLMEQT----HPEFYRAEDADARFTDILFIEKQRGCSIKSQ 62
Query: 389 ATYTIW-----KEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNR 553
+ K + +NIIDTPGHV+F+ E+ + R+ DG ++++ + GV T R
Sbjct: 63 PVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERAIR 122
Query: 554 QMKRYNVPCLAFINKLDRL 610
+ + I+K+DRL
Sbjct: 123 HAIQERLAVTLCISKIDRL 141
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 60.5 bits (140), Expect = 1e-09
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Frame = +2
Query: 215 NIGISAHIDSGKTTLTERILFYTGRID---------QMHEV-KGKDNVGAVMDSMELERQ 364
NI + H+DSGK+T T +++ G ID + E+ KG V+D ++ ER+
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
Query: 365 RGITIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLT 544
RGITI A ++ I IID PGH DF + D A+LV+ G ++
Sbjct: 69 RGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGIS 128
Query: 545 VNRQMKRY 568
N Q + +
Sbjct: 129 KNGQTREH 136
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 60.5 bits (140), Expect = 1e-09
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Frame = +2
Query: 215 NIGISAHIDSGKTTLTERILFYTGRID---------QMHEV-KGKDNVGAVMDSMELERQ 364
NI + H+DSGK+T T +++ G ID + E+ KG V+D ++ ER+
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
Query: 365 RGITIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLT 544
RGITI A ++ I IID PGH DF + D A+LV+ G ++
Sbjct: 69 RGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGIS 128
Query: 545 VNRQMKRY 568
N Q + +
Sbjct: 129 KNGQTREH 136
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 60.5 bits (140), Expect = 1e-09
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Frame = +2
Query: 215 NIGISAHIDSGKTTLTERILFYTGRID---------QMHEV-KGKDNVGAVMDSMELERQ 364
NI + H+DSGK+T T +++ G ID + E+ KG V+D ++ ER+
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
Query: 365 RGITIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLT 544
RGITI A ++ I IID PGH DF + D A+LV+ G ++
Sbjct: 69 RGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGIS 128
Query: 545 VNRQMKRY 568
N Q + +
Sbjct: 129 KNGQTREH 136
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 58.8 bits (136), Expect = 3e-09
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 4/147 (2%)
Frame = +2
Query: 215 NIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQSA-A 391
N+G H+D GKTTLT I K +D +D+ E+ RGITI +
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED-----IDNAPEEKARGITINAFHL 105
Query: 392 TYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYN 571
Y K H +I D PGH D+ + ++GAILV+ + G QT ++
Sbjct: 106 EYETAKRHYAHI-DCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQTREHLLLARQVG 164
Query: 572 VP---CLAFINKLDRLGANPERVLKQM 643
VP + F+NK+D + R L +M
Sbjct: 165 VPLDNIVVFMNKVDEVPDAETRELVEM 191
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 58.8 bits (136), Expect = 3e-09
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 4/147 (2%)
Frame = +2
Query: 215 NIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQSA-A 391
N+G H+D GKTTLT I K +D +D+ E+ RGITI +
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED-----IDNAPEEKARGITINAFHL 106
Query: 392 TYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYN 571
Y K H +I D PGH D+ + ++GAILV+ + G QT ++
Sbjct: 107 EYETAKRHYAHI-DCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQTREHLLLARQVG 165
Query: 572 VP---CLAFINKLDRLGANPERVLKQM 643
VP + F+NK+D + R L +M
Sbjct: 166 VPLDNIVVFMNKVDEVPDAETRELVEM 192
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 58.8 bits (136), Expect = 3e-09
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 4/147 (2%)
Frame = +2
Query: 215 NIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQSA-A 391
N+G H+D GKTTLT I K +D +D+ E+ RGITI +
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED-----IDNAPEEKARGITINAFHL 106
Query: 392 TYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYN 571
Y K H +I D PGH D+ + ++GAILV+ + G QT ++
Sbjct: 107 EYETAKRHYAHI-DCPGHADYIKNMITGAAQMEGAILVVAATDGPMPQTREHLLLARQVG 165
Query: 572 VP---CLAFINKLDRLGANPERVLKQM 643
VP + F+NK+D + R L +M
Sbjct: 166 VPLDNIVVFMNKVDEVPDAETRELVEM 192
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 58.4 bits (135), Expect = 5e-09
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Frame = +2
Query: 215 NIGISAHIDSGKTTLTERILFYTGRID---------QMHEV-KGKDNVGAVMDSMELERQ 364
NI + H+DSGK+T T +++ G ID + E+ KG V+D ++ ER+
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
Query: 365 RGITIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVL 508
RGITI A ++ I IID PGH DF + D A+LV+
Sbjct: 69 RGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVV 116
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 55.2 bits (127), Expect = 4e-08
Identities = 43/131 (32%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Frame = +2
Query: 215 NIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQSAAT 394
N+G HID GKTTLT I + +K + +D + E++RGITI A
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDE-----IDKGKEEKKRGITINVAHI 101
Query: 395 YTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNV 574
+ D PGH DF + +D A+LV+ + GV QT K+ V
Sbjct: 102 GYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVMEQTKEHLILAKQVGV 161
Query: 575 PCLA-FINKLD 604
+A FINK D
Sbjct: 162 KNMAIFINKAD 172
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 55.2 bits (127), Expect = 4e-08
Identities = 43/131 (32%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Frame = +2
Query: 215 NIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQSAAT 394
N+G HID GKTTLT I + +K + +D + E++RGITI A
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDE-----IDKGKEEKKRGITINVAHI 101
Query: 395 YTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNV 574
+ D PGH DF + +D A+LV+ + GV QT K+ V
Sbjct: 102 GYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVMEQTKEHLILAKQVGV 161
Query: 575 PCLA-FINKLD 604
+A FINK D
Sbjct: 162 KNMAIFINKAD 172
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 51.6 bits (118), Expect = 5e-07
Identities = 30/113 (26%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Frame = +2
Query: 215 NIGISAHIDSGKTTLTERILFYTGRIDQMH--------EVKGKDN--VGAVMDSMELERQ 364
N+ H+D+GK+T+ +++F TG +D+ + KG+++ + MD+ + ER+
Sbjct: 111 NMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMDTNDEERE 170
Query: 365 RGITIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG 523
+G T++ Y ++ + I+D PGH F + D A+LV+ + G
Sbjct: 171 KGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 51.6 bits (118), Expect = 5e-07
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Frame = +2
Query: 368 GITIQSAA-TYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQTLT 544
GIT A + + K + +DTPGH F R + D +LV+ + GV+ QT
Sbjct: 188 GITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKEQTAQ 247
Query: 545 VNRQMKRYNVPCLAFINKLDRLGANPERVLKQMRSKLKHN 664
+ K NV + +NK+D+ A+P ++ MRS L+H+
Sbjct: 248 SIKFAKDANVQLVVAVNKIDKPNADP---MRAMRSLLEHD 284
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 49.6 bits (113), Expect = 2e-06
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Frame = +2
Query: 203 ENIRNIGISAHIDSGKTTLTERILFYTGRIDQM------HEV--KGKDNVGA--VMDSME 352
+++ N+ + H+D+GK+TL +L +D HE GK + V+D E
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETE 227
Query: 353 LERQRGITIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG 523
ER+RG+T+ T I ++D PGH DF + D AILV+ + G
Sbjct: 228 EERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTG 284
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 49.6 bits (113), Expect = 2e-06
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Frame = +2
Query: 203 ENIRNIGISAHIDSGKTTLTERILFYTGRIDQM------HEV--KGKDNVGA--VMDSME 352
+++ N+ + H+D+GK+TL +L +D HE GK + V+D E
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETE 245
Query: 353 LERQRGITIQSAATYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG 523
ER+RG+T+ T I ++D PGH DF + D AILV+ + G
Sbjct: 246 EERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTG 302
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 48.8 bits (111), Expect = 4e-06
Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 2/166 (1%)
Frame = +2
Query: 119 KNTKKSSVFQIELQKYSSHVKYAEHKPLENIRN--IGISAHIDSGKTTLTERILFYTGRI 292
K T + + +I+L+ ++ +N+R+ I + H+D+GKT + + I +
Sbjct: 452 KETVEERMERIKLRIAKRKEVAQANRSTDNLRSPVICVLGHVDTGKTKMLDTIR--RTNV 509
Query: 293 DQMHEVKGKDNVGAVMDSMELERQRGITIQSAATYTIWKEHNINIIDTPGHVDFTVEVER 472
Q +GA E ++R ++ + K IIDTPGH F+ R
Sbjct: 510 QQGEAGGITQQIGATEVPAEAIKERCRQVRGFLQDQM-KIPGFLIIDTPGHESFSNLRTR 568
Query: 473 ALRVLDGAILVLCSVGGVQSQTLTVNRQMKRYNVPCLAFINKLDRL 610
+ D AILV+ + G++ QT+ + + + P + +NK+DRL
Sbjct: 569 GSSLCDFAILVVDIMHGLEPQTIESLKLLIKGKTPFVIALNKIDRL 614
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 47.6 bits (108), Expect = 8e-06
Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Frame = +2
Query: 215 NIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQSA-A 391
N+GI H+DSGKTTLT RI E+ A S + R T+ +
Sbjct: 15 NLGILGHVDSGKTTLTRRIA----------ELGSTSAFDAHATSTTTDGIRRNTLDLGFS 64
Query: 392 TYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQT 538
T T + +ID PGH V A V D AI+++ V G+Q QT
Sbjct: 65 TMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAGIQPQT 113
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 37.9 bits (84), Expect = 0.007
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +2
Query: 215 NIGISAHIDSGKTTLTERILFYTGRIDQMHEVKGKDNVGAVMDSMELERQRGITIQSA-A 391
N+GI H+DSGKTTLT RI E+ A S + R T+ +
Sbjct: 15 NLGILGHVDSGKTTLTRRIA----------ELGSTSAFDAHATSTTTDGIRRNTLDLGFS 64
Query: 392 TYTIWKEHNINIIDTPGHVDFTVEVERALRVLDGAILV 505
T T + +ID PGH V A V D AI++
Sbjct: 65 TMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVI 102
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 31.1 bits (67), Expect = 0.78
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 215 NIGISAHIDSGKTTLTERILFYTGRIDQ 298
NI + H+DSGK+T T +++ G ID+
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKCGGIDK 36
>Z81069-5|CAB02995.1| 504|Caenorhabditis elegans Hypothetical
protein F25H9.5 protein.
Length = 504
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 107 INALKNTKKSSVFQIELQKYSSHVKYAEHKPLENIRNIGISAHIDSGKTTLTERILFYTG 286
+ A N ++ ++ K+S + E L N GI +I+SGKT T+++LF+
Sbjct: 54 LRATHNQSTETLGSPKVVKFSIYFSRGER--LSNEEENGIELNIESGKTADTKKLLFHLA 111
Query: 287 R 289
+
Sbjct: 112 K 112
>U56964-7|AAB54034.1| 382|Caenorhabditis elegans Hypothetical
protein F52E4.8 protein.
Length = 382
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 117 LKIQKNRVYFKLSYRNIH---HMSNMQNTNHWKIFEILV 224
+KI+ N++ F + NI+ H T HW++F +LV
Sbjct: 335 VKIKPNKIIFASLHCNINSGVHRETRTLTGHWRVFRVLV 373
>U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform a protein.
Length = 1117
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 120 KIQKNRVYFKLSYRNIHHMSNMQNTNHWKIFEILVYQL 233
+I N VY +L NIH +S++ NT+H ++L Y L
Sbjct: 1036 QIGLNHVYGQLVSNNIHSVSDLANTSH---LDLLAYGL 1070
>U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform b protein.
Length = 1122
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 120 KIQKNRVYFKLSYRNIHHMSNMQNTNHWKIFEILVYQL 233
+I N VY +L NIH +S++ NT+H ++L Y L
Sbjct: 1041 QIGLNHVYGQLVSNNIHSVSDLANTSH---LDLLAYGL 1075
>AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor
tyrosine kinase protein.
Length = 1122
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 120 KIQKNRVYFKLSYRNIHHMSNMQNTNHWKIFEILVYQL 233
+I N VY +L NIH +S++ NT+H ++L Y L
Sbjct: 1041 QIGLNHVYGQLVSNNIHSVSDLANTSH---LDLLAYGL 1075
>AC006830-1|AAK68610.3| 802|Caenorhabditis elegans Hypothetical
protein ZK105.3 protein.
Length = 802
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = -1
Query: 388 SRLYCNSSLTFQLH*VHNSTNIVFTFNLVHLVYSSSIEQNTFSECCLSRVYVS*YTNISN 209
S ++C S V N T+ +F N VH V + I + F+ C++ V +N+
Sbjct: 523 STIFCGSWYPENFTNVDNFTSTIFPINYVH-VNPAEIHKGYFAYHCVTLVKEMRLSNVEG 581
Query: 208 IFQWFVFCIFDM 173
F IF++
Sbjct: 582 YFMMADDAIFNI 593
>U80843-11|AAB37970.1| 296|Caenorhabditis elegans Hypothetical
protein C32B5.15 protein.
Length = 296
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +3
Query: 123 IQKNRVYF---KLSYRNIHHMSNMQNTNHWKIFEIL 221
++ N ++F +S + IHH SN++N NH + E++
Sbjct: 154 LKSNIIFFWKQGMSQQKIHHFSNIRNVNHIILSEMV 189
>Z80223-5|CAB02321.1| 153|Caenorhabditis elegans Hypothetical
protein F26D10.12 protein.
Length = 153
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 388 CNIHYLEGT*H*HY*YSRTCRFHSRSRKSIKSFR-WGD 498
C Y T +Y Y T FHS KS++SFR W D
Sbjct: 116 CIAFYSSPTKSYNYFYPCTSHFHSICEKSLQSFRQWMD 153
>Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical
protein B0240.3 protein.
Length = 1093
Score = 27.5 bits (58), Expect = 9.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +1
Query: 475 IKSFRWGDIGVVFCRWCSE 531
++ F WG +G V C C E
Sbjct: 56 LRGFEWGQVGAVLCEECYE 74
>L11247-1|AAA28010.2| 484|Caenorhabditis elegans Hypothetical
protein F09G8.5 protein.
Length = 484
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 254 LSFQS-LCELIYQYFEYFPMVCVLHI*HVMNISVTQFEIHSIFL 126
++FQS L LI F +F ++ L H + S F+ HS+FL
Sbjct: 17 IAFQSVLLPLILHLFSFF-LLSFLSFLHFRSFSANNFKHHSLFL 59
>AF025463-2|AAB71006.1| 387|Caenorhabditis elegans Serpentine
receptor, class t protein54 protein.
Length = 387
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 261 LNVFCSILDE*TKCTRLKVKTMLVL 335
LN+FCSI TKCT + ML L
Sbjct: 56 LNIFCSIAIIYTKCTHPSTQLMLFL 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,404,551
Number of Sequences: 27780
Number of extensions: 363878
Number of successful extensions: 1057
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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