Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25m22
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0920 - 22633777-22633791,22635103-22635399,22635491-226356...    29   3.7  
09_04_0476 - 17922072-17922469,17922546-17923241,17923405-179235...    28   4.9  
03_06_0499 - 34354040-34354528                                         28   4.9  
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215...    28   6.5  

>08_02_0920 -
           22633777-22633791,22635103-22635399,22635491-22635646,
           22636118-22636203,22637969-22638791
          Length = 458

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 207 KMASGTLLIEAITQVFASFSNMTVVIINSLHFSTVGEKY*EAEIAS 70
           K+  G+  + A    F+ F N+TV+ +  + F   GE+  EA I+S
Sbjct: 150 KLELGSCRLPAAPSDFSGFPNLTVLTLTMVAFPPHGERTLEAMISS 195


>09_04_0476 -
           17922072-17922469,17922546-17923241,17923405-17923569,
           17923670-17924105,17924314-17924739
          Length = 706

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 112 KVKRIYDDHGHIAETGKDLCDCLDEKCPGCHFPCAN-CNSNKCGHEC 249
           K  + +D + +I +  KD+ +CLD       +PCA  C +   G++C
Sbjct: 271 KCSKGFDGNPYIKDGCKDINECLDNTT----YPCAGLCQNTMGGYDC 313


>03_06_0499 - 34354040-34354528
          Length = 162

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 130 DDHGHIAETGKDLCDCLDEKCPGCHFPCANC 222
           D+ G   ++    C C+D +  GCH  C +C
Sbjct: 101 DNCGGCTKSIPPQCQCMDARPAGCHPACKSC 131


>12_02_0695 +
           22220054-22220056,22221226-22221276,22221415-22221501,
           22222064-22222144,22222241-22222353,22222482-22222531,
           22222790-22222857
          Length = 150

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 495 QLYPESIRALYGKSIVHNAVHCTDLPEDGELEVEYFFK 382
           Q  P +IR         N VH +D P++G+ E+  +FK
Sbjct: 96  QAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIALWFK 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,696,857
Number of Sequences: 37544
Number of extensions: 232215
Number of successful extensions: 641
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)