Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt25m22
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-3|AAK18862.2|  201|Caenorhabditis elegans Hypothetical pr...    58   5e-09
U32305-2|AAZ82852.1|  204|Caenorhabditis elegans Hypothetical pr...    58   5e-09
Z68108-1|CAA92134.1|  194|Caenorhabditis elegans Hypothetical pr...    33   0.12 
U39849-1|AAA81045.2|  332|Caenorhabditis elegans Serpentine rece...    31   0.62 
Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical p...    31   0.82 
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.      29   2.5  
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    28   4.4  
Z70687-3|CAM35839.1|  332|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    28   5.8  
U41279-15|AAK31417.2|  316|Caenorhabditis elegans Hypothetical p...    28   5.8  
AL132943-2|CAC14392.1|  367|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF026206-6|AAK39305.3|  167|Caenorhabditis elegans Hypothetical ...    28   5.8  
U28971-2|AAA68377.1|  180|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U32305-3|AAK18862.2|  201|Caenorhabditis elegans Hypothetical
           protein B0336.5a protein.
          Length = 201

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 23/41 (56%), Positives = 27/41 (65%)
 Frame = +1

Query: 163 DLCDCLDEKCPGCHFPCANCNSNKCGHECRINRKWMYDKIE 285
           DLCDCL  +C GCH+PC  C S KC   CR NRK M  ++E
Sbjct: 136 DLCDCLVVECDGCHWPCKQCKSRKCLIGCRQNRKEMVIRVE 176


>U32305-2|AAZ82852.1|  204|Caenorhabditis elegans Hypothetical
           protein B0336.5b protein.
          Length = 204

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 23/41 (56%), Positives = 27/41 (65%)
 Frame = +1

Query: 163 DLCDCLDEKCPGCHFPCANCNSNKCGHECRINRKWMYDKIE 285
           DLCDCL  +C GCH+PC  C S KC   CR NRK M  ++E
Sbjct: 139 DLCDCLVVECDGCHWPCKQCKSRKCLIGCRQNRKEMVIRVE 179


>Z68108-1|CAA92134.1|  194|Caenorhabditis elegans Hypothetical
           protein T05A10.2 protein.
          Length = 194

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = -3

Query: 402 EVEYFFKLVAND*ICFIIILYFQLLVFVIIFYNKIISFYFNFVIHPFSVNSALMATFIGI 223
           E++ + K+VA   IC I  L  +++ FV  F       +  +++HP S  S L+  F+ +
Sbjct: 73  EMKPYEKIVA---ICMIAALILEIVAFVWNFLTSCTCCFKKYLLHPLSPLSFLITIFLTV 129

Query: 222 AV 217
           A+
Sbjct: 130 AI 131


>U39849-1|AAA81045.2|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein39 protein.
          Length = 332

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 20/82 (24%), Positives = 37/82 (45%)
 Frame = -3

Query: 393 YFFKLVAND*ICFIIILYFQLLVFVIIFYNKIISFYFNFVIHPFSVNSALMATFIGIAVC 214
           + FK V+N  +   ++L+  +++  +IF+    SFYF F I    ++SA     +     
Sbjct: 184 FSFKPVSNTMLITTVLLFSLVILIQVIFFTGF-SFYFLFSIERSKMSSATRKLQLKFFYT 242

Query: 213 TWKMASGTLLIEAITQVFASFS 148
           TW      L +  +   +  FS
Sbjct: 243 TWLQMLTHLAVIILPMGYTFFS 264


>Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical
           protein D1054.12 protein.
          Length = 336

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 20/85 (23%), Positives = 36/85 (42%)
 Frame = -3

Query: 468 LYGKSIVHNAVHCTDLPEDGELEVEYFFKLVAND*ICFIIILYFQLLVFVIIFYNKIISF 289
           L G++ V   + C  +P+D      YF   + N   C  +I  F L++   +++   I +
Sbjct: 163 LQGRATVQQEIPC--IPKDVINRPGYFVLSIVNTIPCLCLIFMFSLIIPQALYFVLSIFW 220

Query: 288 YFNFVIHPFSVNSALMATFIGIAVC 214
           Y    +    V + L   F   A+C
Sbjct: 221 YLYHTVSKSQVTNRLQKQFF-FALC 244


>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
           protein C02B4.1 protein.
          Length = 1461

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 175 CLDEKCPGCHFPCANCNSNKC 237
           CLD+KC G      +CN+ KC
Sbjct: 831 CLDDKCDGDDLEKESCNTQKC 851


>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
           protein C02B4.1 protein.
          Length = 1461

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 175 CLDEKCPGCHFPCANCNSNKC 237
           CLD+KC G      +CN+ KC
Sbjct: 831 CLDDKCDGDDLEKESCNTQKC 851


>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
          Length = 1461

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 175 CLDEKCPGCHFPCANCNSNKC 237
           CLD+KC G      +CN+ KC
Sbjct: 831 CLDDKCDGDDLEKESCNTQKC 851


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 8/31 (25%), Positives = 20/31 (64%)
 Frame = -3

Query: 354 IIILYFQLLVFVIIFYNKIISFYFNFVIHPF 262
           ++ L+     FV++F++++ + +F FVI  +
Sbjct: 28  VVTLFLAWSTFVVLFFSRVSALFFTFVIDKY 58


>Z70687-3|CAM35839.1|  332|Caenorhabditis elegans Hypothetical
           protein T14C1.3 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
 Frame = +1

Query: 127 YDDHGHIAETGKDLCDCLDEKCPGCHFPCANCNS-NKCGHECRINRKW------MYDKIE 285
           +D H  I    +++ D L E+   C F   NC   N+    C + +++      MYDKIE
Sbjct: 8   FDFHFRIDTNDRNIMD-LPEELQKCIFSNLNCTDFNRLRRVCVLFKEYVDAGEPMYDKIE 66

Query: 286 IE 291
           IE
Sbjct: 67  IE 68


>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 103  DGRKVKRIYDDHGHIAETGKDLCDCLDEKCPGCHFPCANCNSNKCGHECR 252
            DG   K I D H  + +   D C+  D++   C F C + +   C H CR
Sbjct: 1236 DGPNFKCISDKH--LCDGTND-CEEGDDEGLWCTFNCTDADDLGCSHTCR 1282


>U41279-15|AAK31417.2|  316|Caenorhabditis elegans Hypothetical
           protein C17C3.3 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -3

Query: 486 PESIRALYGKSIVHN--AVHCTDLPEDGELEVEYFFKLVAND*ICFIIILYFQL 331
           P SI A +  +++++  A++     +DG+  +    + V ND ICF++ + F +
Sbjct: 62  PNSIHAYFVSAVIYSTPAIYKVKRIKDGKTFIIRTVEAVQNDRICFVLQVSFHI 115


>AL132943-2|CAC14392.1|  367|Caenorhabditis elegans Hypothetical
           protein Y116F11B.5 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 363 ICFIIILYFQLLVFVIIFYNKIISFYFNFVIHPFSVNSALMATF 232
           +C II +   ++ F  + YN   SF  +F   PF+  S +++ +
Sbjct: 75  LCGIIHMICNIIEFCPLLYNYYFSFEISFECFPFASYSKIVSNY 118


>AF026206-6|AAK39305.3|  167|Caenorhabditis elegans Hypothetical
           protein T28B4.4 protein.
          Length = 167

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 351 IILYFQLLVFVIIFYNKIISFYFNFVI 271
           +I++  LL+ +I+F   I SFY+N +I
Sbjct: 103 LIIFILLLISIIVFAANIGSFYYNALI 129


>U28971-2|AAA68377.1|  180|Caenorhabditis elegans Hypothetical
           protein B0244.9 protein.
          Length = 180

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 345 LYFQLLVFVIIFYNKIISFYFNFV 274
           LY  L+VF+  +++ IISF  NF+
Sbjct: 85  LYMGLIVFLPEYFSNIISFALNFI 108


>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
            protein R155.3 protein.
          Length = 1165

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +1

Query: 166  LCDCLDEKCPGCHFPCANCNSNKCGHECRINRKWMYDKIEIEGNDF 303
            +CD  DEKCPG    CA       G   +     +  K +I   DF
Sbjct: 887  MCD-FDEKCPGKTNSCARYYPESVGESMKFKNLTVECKSKIAEKDF 931


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,809,686
Number of Sequences: 27780
Number of extensions: 238999
Number of successful extensions: 875
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)